agilent human all exon sureselct v7 bed file

Question

[soheil]

Dear Biostars,

I wanted to analyse the coverage of the file in whole exome sequencing using bedtools. I noticed that I need the bed file of the kit that has been used for target enrichment, which is 'human all exon sureselect v7'. Since I am from Iran, due to sanctions, I could not register to the agilent website and download the bed file. I wonder if any one could help me and send the file. Or if there is another source, which I could use to get the bed file, I would really appreciate if you could guide me.

Thank you very much in advance

Answer 1

[ATpoint]

Bed For Agilent Sureselect All Exon Kits ?

Please use the search function and google first.

[soheil]

Yes, I did that. In order to use the https://earray.chem.agilent.com/suredesign/search.htm, fir you should register. However, I could not register to the website from Iran. I have also checked the exomeprobesets in gbdb of UCSC website, but the 'human all exon sureselct vs7' is not listed there for downloading.

[Kevin Blighe]

I have uploaded the files here --for both hg19 and hg38-- for 'SureSelect Human All Exon V7'.

• https://github.com/kevinblighe/agilent

Kevin

[soheil]

Dear Kevin,

Thank you very much for your sympathy and helpful link. I really appreciate your help.

[ATpoint]

Apologies, I did indeed not think about these kinds of restrictions.