Single Cell RNA Seq
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6 months ago
scRNA2023 • 0

Hi Members, I need to do an assignment in single cell RNA seq using the tools tagged above. I will appreciate if anyone can help me out. I have done basic scRNA analysis but need guidance on some of the tools.

Thank you in advance

scTransform Harmony scRNAseq Seurat • 1.5k views
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Please understand that these open-ended Qs are difficult to answer. Read the manuals and help pages and then edit the Q with a specific problem.

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Hi ATpoint..

Thank you for the suggestion. I am familier with basic scRNAseq pipeline using Seurat. However, I am required to reanalyzed a published scRNA Seq data using the following tools: Doubletfinder, Harmony, Cell Typist, CellO, scGATE, Monocle, SoupX, Cellbender, scTransform

Hence, I wish to have a tutor who can help me out with this. I can be contacted at scrna2023@gmail.com Thank you

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Do not add answers unless you're answering the top level post. Use Add Comment or Add Reply instead as appropriate. I've moved your post to the right location this time.

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Thank you for this Ram. Highly appreciated.

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Try something, then ask specific questions. It's not a code writing service here, nor do people actively contact you via email. That's just not how communities like this work.

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Hi ATpoint,

Yes I understand and I am trying to go through the documentations of respective packages also. However, I was just exploring if anyone might be interested to teach :-).

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I was just exploring if anyone might be interested to teach :-).

Are you interesting in paying this someone that might be interested in teaching you?

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Yes of course..

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There are free as well as paid courses online, why ask for this on a question you opened? Why not create a job posting with all relevant details? That will attract the users that freelance.

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yes.. you are right. I have seen similar posts here in Biostars also and though that i might find anyone willing to freelance..

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Those of us who reach the peak of our game invest much time in self-learning... driving ourselves each day to do better... to learn more.

There are many scRNA-seq tutorials available online for these tagged 'tools'. May you please conduct a search and then report back [here] with a bullet-point list of these tutorials - this would greatly assist the community.

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Hi, Yes sure, I can do a search and list down the tutorials for these tagged tools. But mostly, I am going through the documentations of these tools only.

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Thank you. May you have the report for me by Monday midday your local time? I would appreciate it. Thank you.

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What is the difference between the filtered and raw gene-barcode matrix?

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