Venter Genome Vcf
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10.2 years ago
win ▴ 980

Hi all, I was wondering if there was a VCF version of Venter's genome? There is a GFF file but not sure if there was a VCF file?

Thanks in advance.

vcf • 3.2k views
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I can't find an hg38 version, and the old VCF seems to be of a different header format so I am having difficulty converting it to hg38 from hg19. Anybody have an hg38 update for this?

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thanks, just what I was looking for.

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Please be sure to mark her answer as accepted.

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Wonderful! Even updated to latest genome version.

Do you have a full genome version of Venter/Watson updated to hg38 somewhere?

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We just have the VCF.

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The link above appears to be broken. Does anyone have the new link?

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This other link is currently working.

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there are some violations in this VCF:

  • Invalid count number, with fixed count the number should be 1 or higher: key=INFO name=TSA type=String desc=Type of sequence alteration
  • Key GT found in VariantContext field FORMAT at chr1:13001418 but this key isn't defined in the VCFHeader
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10.2 years ago
Dan D 7.4k

Here's a SNP list. It's not VCF, but it contains similar data.

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