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2
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92
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htslib: undefined reference Error
vcf C c++ samtools htslib written 5 weeks ago by noshadho • 0
0
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0
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134
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0
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Doing an operation on one huge VCF, use Python or would C be faster (somewhat niave bcftools/computer science question)
vcf python C bcftools written 6 weeks ago by curious • 320
0
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0
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114
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0
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How to get a list of aligned read and reference positions using samtools
samtools api c++ C htslib written 9 weeks ago by Aref.Ariyapour • 0
5
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1
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1.8k
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8 follow
1
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Resources to learn htslib and C/C++
c++ C htslib written 3.6 years ago by QVINTVS_FABIVS_MAXIMVS • 2.4k • updated 13 months ago by chernouhov sergey • 50
143
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14
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22k
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24 follow
14
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C/C++ Libraries For Bioinformatics?
C written 10.1 years ago by Daniel Swan ♦ 13k • updated 15 months ago by chernouhov sergey • 50
9
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1
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1.0k
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6 follow
1
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Minimal example of using htslib from conda to build a simple c file?
C conda htslib written 20 months ago by Click downvote • 690 • updated 20 months ago by John Marshall ♦ 2.0k
12
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2
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639
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2
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Is there a single header file somewhere I can use to read bam?
bam C c++ written 20 months ago by Click downvote • 690 • updated 20 months ago by John Marshall ♦ 2.0k
3
votes
1
answer
632
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1
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GNU autotools and samtools/htslib
samtools configure C autotools htslib written 21 months ago by Pierre Lindenbaum ♦ 129k • updated 21 months ago by John Marshall ♦ 2.0k
2
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1
answer
849
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1
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Is there a code to find consensus motif
python C shell awk written 23 months ago by vinayjrao • 170 • updated 23 months ago by Carlo Yague • 5.0k
33
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5
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7.6k
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13 follow
5
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Which C++ Libraries Are Best For Dealing With Fastq Files?
fastq next-gen C sequencing written 10.3 years ago by Jeremy Leipzig ♦ 19k • updated 23 months ago by cartoonist • 80
0
votes
0
answers
847
views
0
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GWAS: Same workflow and inputs, different servers, very different output (EMMAX)
server gwas C cluster emmax written 2.2 years ago by michael.nagle • 100
9
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5
answers
1.8k
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6 follow
5
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Faster reading sequences from a fastq file
fastq C written 2.5 years ago by brs1111 • 10 • updated 2.5 years ago by kloetzl • 1.1k
3
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1
answer
835
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1
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extract_sv_reads/samblaster: explain this code please.
splicedread c++ C samblaster written 2.5 years ago by Pierre Lindenbaum ♦ 129k • updated 2.5 years ago by gf4ea • 30
0
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0
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1.2k
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0
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Job: Computational Biologist / Bioinformatician, The Sanger Institute, Cambridge, UK
perl cc++ C job python written 2.8 years ago by Recruit • 230 • updated 2.8 years ago by genomax ♦ 85k
1
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0
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1.2k
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0
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Job: Bioinformatician/ Senior Bioinformatician, Wellcome Trust Sanger Institute, Cambridge, UK
python oracle c++ C job written 3.0 years ago by Recruit • 230 • updated 3.0 years ago by genomax ♦ 85k
4
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2
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4.0k
views
2
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Error installng bcftools-1.4
software error bcftools osx C samtools written 3.2 years ago by abdulbenissa • 0
1
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0
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2.2k
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0
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Reading atomic coordinates from a PDB file in C
pdb bioinformatics atom C coordinate written 3.4 years ago by souparnoa91 • 10
4
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2
answers
3.1k
views
2
answers
How Can I Apply A Pssm Efficiently?
pssm C written 8.1 years ago by glocke01 • 170 • updated 3.4 years ago by Biostar ♦♦ 20
0
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0
answers
1.3k
views
0
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error during installationi of KisSplice
c++ C rna-seq snp kissplice written 3.9 years ago by yoyofangliu • 0 • updated 3.6 years ago by vectorio9128 • 0
0
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0
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1.3k
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0
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Job: Postdoc - Statistical Computing in Multi-Omics and Drug Development , Heidelberg, Germany
proetomics crispr C job R written 4.0 years ago by EMBL Recruitment • 20 • updated 4.0 years ago by genomax ♦ 85k
0
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0
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1.1k
views
0
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Job: PetaGene - startup looking for developers, Cambridge UK
next-gen C job c++ written 4.0 years ago by dan • 0
12
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3
answers
15k
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3
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C program to find complementary of DNA sequence
myposts C dna written 4.6 years ago by Arindam Ghosh • 280 • updated 4.6 years ago by Alex Reynolds ♦ 30k
7
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1
answer
5.0k
views
1
answer
htslib C API: getting reads from region
C api samtools htslib written 5.0 years ago by QVINTVS_FABIVS_MAXIMVS • 2.4k • updated 5.0 years ago by Pierre Lindenbaum ♦ 129k
25
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1
answer
3.1k
views
16 follow
1
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Tool: Quick statistics from the command line
C tool statistics written 5.0 years ago by Kamil • 2.0k • updated 5.0 years ago by Istvan Albert ♦♦ 84k
1
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1
answer
1.1k
views
1
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Blast implementation details help
C blast written 5.1 years ago by felipesulser • 0 • updated 5.1 years ago by h.mon ♦ 30k
4
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1
answer
2.9k
views
1
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Sequence Display Controls For C#/.Net
visualization sequence C windows written 9.3 years ago by Mark Anthony Gibbins • 130 • updated 5.3 years ago by Biostar ♦♦ 20
3
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1
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2.6k
views
1
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Best HMM library for bioinformatics
hmm java C tool python written 5.6 years ago by Dave • 70 • updated 5.6 years ago by a.polo88 • 110
1
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2
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1.9k
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2
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read multiple fasta sequence using kseq.h
kseq.h sequence C written 6.0 years ago by madhurima.das • 10 • updated 6.0 years ago by Alex Reynolds ♦ 30k
3
votes
2
answers
2.8k
views
5 follow
2
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Implement Bgzip Into C Program
samtools tabix C written 7.7 years ago by FGV • 110 • updated 6.0 years ago by Biostar ♦♦ 20
3
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2
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1.5k
views
2
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What does the indel field of bam_pileup1_t mean?
samtools bam C written 6.1 years ago by kettleg • 30
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