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Recent Replies
Comment: Index files from alignments are always 96 bytes (Oxford Nanopore)
by
LChart
1.4k
You can split the bam easily after alignment (sort by read name, chop it up, sort by position).
You can post the issue in the appropriate…
Comment: Gene expression annotation for microarray from BiomaRt R package
by
jv
▴
620
What information do you needed updated? For example, do you want the genomic coordinates to be converted to a newer genome version? Do you …
Comment: Does this mean it is running? It has been like this for a while. I am using Trim
by
Ram
37k
> I won't post in this website ever again.
Just use it properly - you're welcome as long as you're using the forum right. If not, it sours…
Answer: Brain cell type deconvolution
by
jv
▴
620
There are several detailed tutorials available for CiberSortX, but you have to register for the software in order to access them.
For a…
Comment: Gene Tracks from 10x Data
by
swbarnes2
12k
Yeah, pretty much. Possibly Picardtools has something for filtering by tags?
Comment: Does this mean it is running? It has been like this for a while. I am using Trim
by
Ram
37k
You can edit and change the paths - it is always a good idea to use fake paths. I'll make those changes now.
Comment: Gene Tracks from 10x Data
by
ntsopoul
▴
10
Thanks a lot! I thought already that something similar might be the case... So by filtering you mean "grep" the cell ID of interest from th…
Answer: Gene Tracks from 10x Data
by
swbarnes2
12k
The bams that 10xGenomics makes are tagged with cell barcode. So figure out which call barcodes you want, then you can filter the bam acco…
Comment: Does this mean it is running? It has been like this for a while. I am using Trim
by
didi
•
0
all my questions involve my terminal path
Comment: Does this mean it is running? It has been like this for a while. I am using Trim
by
didi
•
0
my questions involve my path to my terminal which is a personal information. I won't post in this website ever again. Can you please delete…
Comment: Mutect2 error: Badly formed genome unclippedLoc
by
Ram
37k
OP has already mentioned what their error was. I'm moving your answer to a comment.
Comment: Is there a way to obtain a list/dataframe of the CorLevelPlot results?
by
Kevin Blighe
83k
Cool - thank you
Comment: Does this mean it is running? It has been like this for a while. I am using Trim
by
Ram
37k
Hi, you deleted a post after being asked specifically not to delete it. Please stop abusing the forum or your account will be suspended.
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