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8
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1
answer
170
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5 follow
1
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Minimal example of using htslib from conda to build a simple c file?
C conda htslib written 6 weeks ago by Click downvote • 650 • updated 6 weeks ago by John Marshall • 1.4k
12
votes
2
answers
207
views
2
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Is there a single header file somewhere I can use to read bam?
bam C c++ written 6 weeks ago by Click downvote • 650 • updated 6 weeks ago by John Marshall • 1.4k
3
votes
1
answer
241
views
1
answer
GNU autotools and samtools/htslib
samtools configure C autotools htslib written 10 weeks ago by Pierre Lindenbaum ♦ 115k • updated 9 weeks ago by John Marshall • 1.4k
0
votes
0
answers
193
views
0
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Error in LDMAP program: Calculating LD units between each SNP on a chromosome
ld-units ldmap C ld written 3 months ago by helpme • 0
2
votes
1
answer
266
views
1
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Is there a code to find consensus motif
python C shell awk written 4 months ago by vinayjrao • 110 • updated 4 months ago by Carlo Yague • 4.3k
33
votes
5
answers
6.5k
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13 follow
5
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Which C++ Libraries Are Best For Dealing With Fastq Files?
fastq next-gen C sequencing written 8.7 years ago by Jeremy Leipzig ♦ 18k • updated 4 months ago by cartoonist • 30
0
votes
0
answers
258
views
0
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GWAS: Same workflow and inputs, different servers, very different output (EMMAX)
server gwas C cluster emmax written 7 months ago by michael.nagle • 90
9
votes
5
answers
784
views
6 follow
5
answers
Faster reading sequences from a fastq file
fastq C written 10 months ago by brs1111 • 10 • updated 10 months ago by kloetzl • 990
3
votes
1
answer
441
views
1
answer
extract_sv_reads/samblaster: explain this code please.
splicedread c++ C samblaster written 11 months ago by Pierre Lindenbaum ♦ 115k • updated 10 months ago by gf4ea • 30
0
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0
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711
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0
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Job: Computational Biologist / Bioinformatician, The Sanger Institute, Cambridge, UK
perl cc++ C job python written 15 months ago by Recruit • 220 • updated 15 months ago by genomax ♦ 59k
1
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0
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770
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0
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Job: Bioinformatician/ Senior Bioinformatician, Wellcome Trust Sanger Institute, Cambridge, UK
python oracle c++ C job written 17 months ago by Recruit • 220 • updated 17 months ago by genomax ♦ 59k
4
votes
2
answers
2.6k
views
2
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Error installng bcftools-1.4
software error bcftools osx C samtools written 19 months ago by abdulbenissa • 0
4
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2
answers
1.1k
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7 follow
2
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Resources to learn htslib and C/C++
c++ C htslib written 2.0 years ago by QVINTVS_FABIVS_MAXIMVS • 2.1k • updated 21 months ago by tlytiger • 0
1
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0
answers
1.2k
views
0
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Reading atomic coordinates from a PDB file in C
pdb bioinformatics atom C coordinate written 22 months ago by souparnoa91 • 10
4
votes
2
answers
2.6k
views
2
answers
How Can I Apply A Pssm Efficiently?
pssm C written 6.5 years ago by glocke01 • 160 • updated 22 months ago by Biostar ♦♦ 20
0
votes
0
answers
991
views
0
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error during installationi of KisSplice
c++ C rna-seq snp kissplice written 2.4 years ago by yoyofangliu • 0 • updated 24 months ago by vectorio9128 • 0
0
votes
0
answers
913
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0
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Job: Postdoc - Statistical Computing in Multi-Omics and Drug Development , Heidelberg, Germany
proetomics crispr C job R written 2.4 years ago by EMBL Recruitment • 20 • updated 2.4 years ago by genomax ♦ 59k
0
votes
0
answers
854
views
0
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Job: PetaGene - startup looking for developers, Cambridge UK
next-gen C job c++ written 2.4 years ago by dan • 0
11
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3
answers
8.6k
views
3
answers
C program to find complementary of DNA sequence
myposts C dna written 3.0 years ago by ag1805x • 110 • updated 3.0 years ago by Alex Reynolds ♦ 26k
6
votes
1
answer
3.8k
views
1
answer
htslib C API: getting reads from region
C api samtools htslib written 3.4 years ago by QVINTVS_FABIVS_MAXIMVS • 2.1k • updated 3.4 years ago by Pierre Lindenbaum ♦ 115k
25
votes
1
answer
2.3k
views
16 follow
1
answer
Tool: Quick statistics from the command line
C tool statistics written 3.4 years ago by Kamil • 1.9k • updated 3.4 years ago by Istvan Albert ♦♦ 78k
1
vote
1
answer
813
views
1
answer
Blast implementation details help
C blast written 3.5 years ago by felipesulser • 0 • updated 3.5 years ago by h.mon ♦ 21k
4
votes
1
answer
2.5k
views
1
answer
Sequence Display Controls For C#/.Net
visualization sequence C windows written 7.7 years ago by Mark Anthony Gibbins • 130 • updated 3.7 years ago by Biostar ♦♦ 20
3
votes
1
answer
2.2k
views
1
answer
Best HMM library for bioinformatics
hmm java C tool python written 4.0 years ago by Dave • 70 • updated 4.0 years ago by a.polo88 • 100
0
votes
2
answers
1.4k
views
2
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read multiple fasta sequence using kseq.h
kseq.h sequence C written 4.4 years ago by madhurima.das • 0 • updated 4.4 years ago by Alex Reynolds ♦ 26k
3
votes
2
answers
2.4k
views
5 follow
2
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Implement Bgzip Into C Program
samtools tabix C written 6.2 years ago by FGV • 100 • updated 4.4 years ago by Biostar ♦♦ 20
3
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2
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1.2k
views
2
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What does the indel field of bam_pileup1_t mean?
samtools bam C written 4.5 years ago by kettleg • 30
0
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1
answer
1.2k
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1
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BLAST: Querying a single sequence without input file in C
C blast written 4.5 years ago by madhurima.das • 0 • updated 4.5 years ago by Pierre Lindenbaum ♦ 115k
0
votes
0
answers
1.1k
views
0
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How Reproducible Are The Results Programs Compiled With Blast Libs Vs Calling The Ncbi Binary?
C blast written 4.7 years ago by pld ♦ 4.7k • updated 4.6 years ago by Biostar ♦♦ 20
2
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0
answers
1.8k
views
0
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Tool: pytabix - quickly retrieve rows from a table of positions or regions
python tabix C tool written 4.6 years ago by Kamil • 1.9k
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