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5
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8 follow
1
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Resources to learn htslib and C/C++
c++ C htslib written 2.8 years ago by QVINTVS_FABIVS_MAXIMVS • 2.3k • updated 3 months ago by chernouhov • 10
143
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14
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21k
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24 follow
14
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C/C++ Libraries For Bioinformatics?
C written 9.2 years ago by Daniel Swan ♦ 13k • updated 5 months ago by chernouhov • 10
8
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1
answer
589
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5 follow
1
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Minimal example of using htslib from conda to build a simple c file?
C conda htslib written 11 months ago by Click downvote • 670 • updated 11 months ago by John Marshall ♦ 1.7k
12
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2
answers
399
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2
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Is there a single header file somewhere I can use to read bam?
bam C c++ written 11 months ago by Click downvote • 670 • updated 11 months ago by John Marshall ♦ 1.7k
3
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1
answer
461
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1
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GNU autotools and samtools/htslib
samtools configure C autotools htslib written 11 months ago by Pierre Lindenbaum ♦ 122k • updated 11 months ago by John Marshall ♦ 1.7k
2
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1
answer
577
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1
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Is there a code to find consensus motif
python C shell awk written 13 months ago by vinayjrao • 140 • updated 13 months ago by Carlo Yague • 4.6k
33
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5
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7.1k
views
13 follow
5
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Which C++ Libraries Are Best For Dealing With Fastq Files?
fastq next-gen C sequencing written 9.5 years ago by Jeremy Leipzig ♦ 18k • updated 13 months ago by cartoonist • 60
0
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581
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0
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GWAS: Same workflow and inputs, different servers, very different output (EMMAX)
server gwas C cluster emmax written 16 months ago by michael.nagle • 100
9
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5
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1.3k
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6 follow
5
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Faster reading sequences from a fastq file
fastq C written 20 months ago by brs1111 • 10 • updated 20 months ago by kloetzl • 1.0k
3
votes
1
answer
640
views
1
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extract_sv_reads/samblaster: explain this code please.
splicedread c++ C samblaster written 20 months ago by Pierre Lindenbaum ♦ 122k • updated 20 months ago by gf4ea • 30
0
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0
answers
946
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Job: Computational Biologist / Bioinformatician, The Sanger Institute, Cambridge, UK
perl cc++ C job python written 2.0 years ago by Recruit • 230 • updated 2.0 years ago by genomax ♦ 71k
1
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Job: Bioinformatician/ Senior Bioinformatician, Wellcome Trust Sanger Institute, Cambridge, UK
python oracle c++ C job written 2.2 years ago by Recruit • 230 • updated 2.2 years ago by genomax ♦ 71k
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2
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3.4k
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2
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Error installng bcftools-1.4
software error bcftools osx C samtools written 2.4 years ago by abdulbenissa • 0
1
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0
answers
1.8k
views
0
answers
Reading atomic coordinates from a PDB file in C
pdb bioinformatics atom C coordinate written 2.6 years ago by souparnoa91 • 10
4
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2
answers
2.9k
views
2
answers
How Can I Apply A Pssm Efficiently?
pssm C written 7.3 years ago by glocke01 • 160 • updated 2.6 years ago by Biostar ♦♦ 20
0
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0
answers
1.2k
views
0
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error during installationi of KisSplice
c++ C rna-seq snp kissplice written 3.1 years ago by yoyofangliu • 0 • updated 2.8 years ago by vectorio9128 • 0
0
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0
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1.1k
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0
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Job: Postdoc - Statistical Computing in Multi-Omics and Drug Development , Heidelberg, Germany
proetomics crispr C job R written 3.2 years ago by EMBL Recruitment • 20 • updated 3.2 years ago by genomax ♦ 71k
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Job: PetaGene - startup looking for developers, Cambridge UK
next-gen C job c++ written 3.2 years ago by dan • 0
12
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3
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12k
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3
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C program to find complementary of DNA sequence
myposts C dna written 3.8 years ago by Arindam Ghosh • 170 • updated 3.8 years ago by Alex Reynolds ♦ 28k
6
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1
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4.4k
views
1
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htslib C API: getting reads from region
C api samtools htslib written 4.2 years ago by QVINTVS_FABIVS_MAXIMVS • 2.3k • updated 4.2 years ago by Pierre Lindenbaum ♦ 122k
25
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1
answer
2.8k
views
16 follow
1
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Tool: Quick statistics from the command line
C tool statistics written 4.2 years ago by Kamil • 1.9k • updated 4.2 years ago by Istvan Albert ♦♦ 81k
1
vote
1
answer
947
views
1
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Blast implementation details help
C blast written 4.3 years ago by felipesulser • 0 • updated 4.3 years ago by h.mon ♦ 27k
4
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1
answer
2.7k
views
1
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Sequence Display Controls For C#/.Net
visualization sequence C windows written 8.5 years ago by Mark Anthony Gibbins • 130 • updated 4.5 years ago by Biostar ♦♦ 20
3
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1
answer
2.4k
views
1
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Best HMM library for bioinformatics
hmm java C tool python written 4.8 years ago by Dave • 70 • updated 4.7 years ago by a.polo88 • 100
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2
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1.7k
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2
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read multiple fasta sequence using kseq.h
kseq.h sequence C written 5.2 years ago by madhurima.das • 0 • updated 5.2 years ago by Alex Reynolds ♦ 28k
3
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2
answers
2.7k
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5 follow
2
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Implement Bgzip Into C Program
samtools tabix C written 6.9 years ago by FGV • 110 • updated 5.2 years ago by Biostar ♦♦ 20
3
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1.4k
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2
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What does the indel field of bam_pileup1_t mean?
samtools bam C written 5.2 years ago by kettleg • 30
0
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1.4k
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1
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BLAST: Querying a single sequence without input file in C
C blast written 5.3 years ago by madhurima.das • 0 • updated 5.3 years ago by Pierre Lindenbaum ♦ 122k
0
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0
answers
1.2k
views
0
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How Reproducible Are The Results Programs Compiled With Blast Libs Vs Calling The Ncbi Binary?
C blast written 5.5 years ago by pld ♦ 4.8k • updated 5.4 years ago by Biostar ♦♦ 20
2
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2.2k
views
0
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Tool: pytabix - quickly retrieve rows from a table of positions or regions
python tabix C tool written 5.4 years ago by Kamil • 1.9k
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