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Showing: dictionary • reset

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Working with redundant information on BLAST output

filter python blast dictionary written 3 months ago by flogin • 150

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485

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I am having a problem with getting all the list of amino acid values from dict in python!

python protein biopython dictionary written 9 months ago by macadamopetrus • 0 • updated 9 months ago by Joe ♦ 14k

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2.6k

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Converting fasta file into list with names and sequences

fasta python list dictionary written 22 months ago by anme • 0 • updated 22 months ago by WouterDeCoster ♦ 41k

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1.0k

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Master dictionary of database file (2D dictionary) using Biopython, then specify key with string

fasta python dictionary written 22 months ago by incensefrenzie2006 • 0 • updated 22 months ago by cindy.perscheid • 90

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642

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How to create dictionary by reading lines from a file and find exact values inside another file through looping a defined path?

python bash dictionary ptt linux written 2.4 years ago by Promi • 10 • updated 2.4 years ago by Pierre Lindenbaum ♦ 123k

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1.2k

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a hash with a pair of sequences as a value

perl hash python dictionary written 3.8 years ago by natasha.sernova • 3.6k • updated 3.8 years ago by Prakki Rama • 2.3k

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1.3k

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Mass spectrometry and 'One hit wonders' dictionary with exclusive peptides for proteins in python

hydrolysis proteins one_hit_wonders dictionary written 4.4 years ago by deb1500 • 0

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9.3k

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How to generate a fasta file from a python dictionary or lists?

fasta python list sequence dictionary written 4.4 years ago by grayapply2009 • 170 • updated 4.4 years ago by Manu Prestat ♦ 3.9k

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1.5k

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How can I find the keys from a dictionary in a DNA sequence?

python dna biopython dictionary written 5.2 years ago by albamaria.muniesa • 0 • updated 5.2 years ago by Giovanni M Dall'Olio ♦ 26k

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2.9k

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Identify restriction sites of a cDNA sequence using a dictionary

python biopython restriction enzymes dictionary written 5.2 years ago by albamaria.muniesa • 0 • updated 5.2 years ago by Biojl • 1.7k

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1.4k

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How can I find the elements from a list in the keys from a dictionary?

python list biopython dictionary written 5.2 years ago by albamaria.muniesa • 0 • updated 5.2 years ago by Eric Normandeau ♦ 10k

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Recent Replies

C: awk, copy and paste single line command by michael.ante • 3.5k
From the most inner steps (the `sed '1d' penicillin_SNPs.txt | cut -d "_" -f 2 ` and `sed '1d' p...
C: Allelic-Specific RNA-Seq pipeline by giovannaventola3es9 • 30
What means that it is not an easy task? I need a fast pipeline, I thought of GATK. What do you th...
C: Allelic-Specific RNA-Seq pipeline by colindaven • 1.8k
He/we already recommended phaser a couple of times. It is not an easy task, so good luck! The mou...
C: Tool for CNV benchmarking vs gold standards by WouterDeCoster ♦ 41k
Please use `ADD COMMENT` or `ADD REPLY` to answer to previous reactions, as such this thread rema...
C: awk, copy and paste single line command by 3335098459 • 10
Yes you are right. This is the complete command divided into different sections by \\ I guess. c...
C: Visualisation of clusters produced by mothur by 5heikki ♦ 8.6k
Correct me if I'm wrong, but your don't have any distance values in that file. Without such infor...
A: Tool for CNV benchmarking vs gold standards by eric54321g • 0
I read through the Truvari docs, and CNV isn't mentioned. Do you know if it can handle numeric g...
C: GPU based parallel processing in genomics tools by hafiz.talhamalik • 130
ok got that. I have also seen a [GPU Based Aligner]: https://nvlabs.github.io/nvbio/nvbowtie_page...
C: awk, copy and paste single line command by 5heikki ♦ 8.6k
Run the command in the directory where you actually have the files referred by the command?
C: What Ngs Read Simulators Are Available For Paired-End Data? by pom • 0
From my experience `dwgsim` is much better that its predecessor `wgsim`. The former has some nice...
C: awk, copy and paste single line command by michael.ante • 3.5k
In one cut call, you use "_" as delim char, in the other you don't. If you get errors like thi...
C: Tool for CNV benchmarking vs gold standards by WouterDeCoster ♦ 41k
Does Truvari not do the job here?

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