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<prev • 19 results • page 1 of 1 • next >
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When to remove duplicates using deduplication in Exome-Seq
trueseq dna-seq exome-seq truseq gatk written 7 days ago by oriolebaltimore • 60 • updated 7 days ago by Charles Warden ♦ 5.9k
1
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1
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96
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1
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How to find true mutations in tumor by removing the background from matched sample?
normalization exome-seq R snp pipeline written 4 weeks ago by dodausp • 110 • updated 4 weeks ago by bernatgel • 1.6k
4
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1
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115
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1
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Drug interaction not running in MAFtools
R maftools exome-seq snp written 5 weeks ago by dodausp • 110
8
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1
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484
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5 follow
1
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Is there any precedent for considering marked duplicates when calculating coverage in high-depth whole-exome sequencing?
exome duplicates exome-seq coverage written 8 months ago by Dan D ♦ 6.7k • updated 11 weeks ago by marco_ul • 0
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0
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337
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Process the VCF files for a huge number of samples
vcf indel exome-seq snp written 10 months ago by wangdp123 • 140
4
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1
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939
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1
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[solved] SnpEff reports intron variants in exons ?
annotation snpeff exome-seq snp written 15 months ago by badredda • 60 • updated 15 months ago by cpad0112 ♦ 10k
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584
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Transcript consensus sequence for variant calling analysis
exome-seq sequencing written 23 months ago by bharata1803 • 390
3
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1
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739
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1
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converting Indel Realigned Bam to fastq
next-gen exome-seq written 2.0 years ago by IP • 510 • updated 2.0 years ago by igor ♦ 7.2k
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2
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3.4k
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9 follow
2
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frequently found false positives from exome seq
targetted-capture exome-seq written 4.4 years ago by poisonAlien • 2.7k • updated 2.2 years ago by Biostar ♦♦ 20
0
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657
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How to get the number of RNA reads for mutations of exome-seq?
exome-seq mutation variant rna-seq written 2.3 years ago by agicict • 130
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766
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Exome Seq Data analysis - chromosome start and end positions
next-gen exome-seq rna-seq snp written 2.4 years ago by prathyushakonda • 0
7
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2
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1.5k
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2
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Remove duplicates from exome sequencing data
variants sequencing exome-seq written 2.7 years ago by kulvait • 220
0
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1
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When is recommended to remove or keep Unpaired "Orphan" reads in downstream analysis?
exome-seq alignment samtools rna-seq snp written 2.8 years ago by fernardo • 110 • updated 2.8 years ago by Devon Ryan ♦ 87k
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Finding miRNA motifs from Exome sequencing
sequence exome-seq mirna written 2.9 years ago by bharata1803 • 390
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1.1k
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is it possible to define a window size in ADTex CNV tool?
adtex exome-seq cnv written 3.8 years ago by vchris_ngs • 4.6k
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867
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Is my understanding of mapping direction right?
alignment exome-seq written 3.8 years ago by wangyi2412 • 210
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2.8k
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VarScan output different when choosing VCF and variant missing?
variant calling varscan vcf exome-seq written 3.9 years ago by Pascal • 250
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3
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1.9k
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7 follow
3
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exome cnv analysis of cases only
case exome-seq cnv written 4.5 years ago by peris • 110 • updated 4.1 years ago by Vivek Todur • 50
4
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1.5k
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cn.mops error - Help !
cn.mops exome-seq r-bioconductor granges written 4.7 years ago by poisonAlien • 2.7k • updated 4.6 years ago by Biostar ♦♦ 20
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