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<prev • 19 results • page 1 of 1 • next >
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When to remove duplicates using deduplication in Exome-Seq
trueseq dna-seq exome-seq truseq gatk written 3 months ago by oriolebaltimore • 60 • updated 3 months ago by Charles Warden ♦ 6.6k
1
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1
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179
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1
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How to find true mutations in tumor by removing the background from matched sample?
normalization exome-seq R snp pipeline written 4 months ago by dodausp • 110 • updated 4 months ago by bernatgel • 1.9k
4
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1
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163
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1
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Drug interaction not running in MAFtools
R maftools exome-seq snp written 4 months ago by dodausp • 110
8
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1
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614
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5 follow
1
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Is there any precedent for considering marked duplicates when calculating coverage in high-depth whole-exome sequencing?
exome duplicates exome-seq coverage written 11 months ago by Dan D ♦ 6.7k • updated 5 months ago by marco_ul • 0
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401
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0
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Process the VCF files for a huge number of samples
vcf indel exome-seq snp written 13 months ago by wangdp123 • 140
4
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1
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1.1k
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1
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[solved] SnpEff reports intron variants in exons ?
annotation snpeff exome-seq snp written 18 months ago by badredda • 90 • updated 18 months ago by cpad0112 ♦ 11k
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644
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Transcript consensus sequence for variant calling analysis
exome-seq sequencing written 2.2 years ago by bharata1803 • 420
3
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1
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792
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1
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converting Indel Realigned Bam to fastq
next-gen exome-seq written 2.3 years ago by IP • 530 • updated 2.3 years ago by igor ♦ 7.6k
7
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2
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3.6k
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9 follow
2
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frequently found false positives from exome seq
targetted-capture exome-seq written 4.7 years ago by poisonAlien • 2.8k • updated 2.5 years ago by Biostar ♦♦ 20
0
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705
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How to get the number of RNA reads for mutations of exome-seq?
exome-seq mutation variant rna-seq written 2.6 years ago by agicict • 130
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Exome Seq Data analysis - chromosome start and end positions
next-gen exome-seq rna-seq snp written 2.6 years ago by prathyushakonda • 20
7
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2
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1.6k
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2
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Remove duplicates from exome sequencing data
variants sequencing exome-seq written 3.0 years ago by kulvait • 230
0
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1
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982
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When is recommended to remove or keep Unpaired "Orphan" reads in downstream analysis?
exome-seq alignment samtools rna-seq snp written 3.1 years ago by fernardo • 120 • updated 3.1 years ago by Devon Ryan ♦ 89k
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1.1k
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Finding miRNA motifs from Exome sequencing
sequence exome-seq mirna written 3.1 years ago by bharata1803 • 420
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1.2k
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is it possible to define a window size in ADTex CNV tool?
adtex exome-seq cnv written 4.0 years ago by ivivek_ngs • 4.8k
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901
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Is my understanding of mapping direction right?
alignment exome-seq written 4.1 years ago by wangyi2412 • 220
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3.0k
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VarScan output different when choosing VCF and variant missing?
variant calling varscan vcf exome-seq written 4.1 years ago by Pascal • 250
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3
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2.0k
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7 follow
3
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exome cnv analysis of cases only
case exome-seq cnv written 4.7 years ago by peris • 120 • updated 4.3 years ago by Vivek Todur • 50
4
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1.6k
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cn.mops error - Help !
cn.mops exome-seq r-bioconductor granges written 5.0 years ago by poisonAlien • 2.8k • updated 4.8 years ago by Biostar ♦♦ 20
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