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<prev • 23 results • page 1 of 1 • next >
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.stats file from vcf file with called variants - FilterMutectCalls (GATK)
gatk filtermutectcalls exome-seq written 8 weeks ago by wiki97 • 0
1
vote
1
answer
160
views
1
answer
Somatic Structure Variation on exome-seq data - pipeline recommendations?
gatk exome-seq written 12 weeks ago by wiki97 • 0 • updated 12 weeks ago by Pierre Lindenbaum ♦ 132k
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153
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What type of duplicates are to be removed while analyzing whole exome data?
exome-seq snp written 6 months ago by vinayjrao • 200
7
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2
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237
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2
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Correlation between coverage and variant calling
exome-seq variant_calling snp written 11 months ago by vinayjrao • 200 • updated 11 months ago by harish • 320
5
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1
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361
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5 follow
1
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Detecting copy number variants from whole-exome sequencing data
exome-seq cnv written 14 months ago by Shicheng Guo • 8.5k • updated 14 months ago by hafiz.talhamalik • 250
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1.2k
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1
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When to remove duplicates using deduplication in Exome-Seq
trueseq dna-seq exome-seq truseq gatk written 2.0 years ago by oriolebaltimore • 160 • updated 2.0 years ago by Charles Warden ♦ 8.0k
1
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593
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1
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How to find true mutations in tumor by removing the background from matched sample?
normalization exome-seq R snp pipeline written 2.1 years ago by dodausp • 140 • updated 2.1 years ago by bernatgel • 2.8k
4
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1
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421
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1
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Drug interaction not running in MAFtools
R maftools exome-seq snp written 2.1 years ago by dodausp • 140
8
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1
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1.6k
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5 follow
1
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Is there any precedent for considering marked duplicates when calculating coverage in high-depth whole-exome sequencing?
exome duplicates exome-seq coverage written 2.7 years ago by Dan D ♦ 7.1k • updated 2.2 years ago by marco_ul • 0
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673
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Process the VCF files for a huge number of samples
vcf indel exome-seq snp written 2.9 years ago by wangdp123 • 250
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1
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2.1k
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1
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[solved] SnpEff reports intron variants in exons ?
annotation snpeff exome-seq snp written 3.3 years ago by δΉ™ • 180 • updated 3.3 years ago by cpad0112 ♦ 14k
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1.0k
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Transcript consensus sequence for variant calling analysis
exome-seq sequencing written 3.9 years ago by bharata1803 • 490
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1
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1.1k
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1
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converting Indel Realigned Bam to fastq
next-gen exome-seq written 4.0 years ago by IP • 710 • updated 4.0 years ago by igor ♦ 12k
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2
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4.5k
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9 follow
2
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frequently found false positives from exome seq
targetted-capture exome-seq written 6.4 years ago by poisonAlien • 3.0k • updated 4.2 years ago by Biostar ♦♦ 20
0
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957
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How to get the number of RNA reads for mutations of exome-seq?
exome-seq mutation variant rna-seq written 4.3 years ago by agicict • 160
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1.2k
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Exome Seq Data analysis - chromosome start and end positions
next-gen exome-seq rna-seq snp written 4.3 years ago by prathyushakonda • 20
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2
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2.3k
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2
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Remove duplicates from exome sequencing data
variants sequencing exome-seq written 4.7 years ago by kulvait • 250
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1
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1.5k
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When is recommended to remove or keep Unpaired "Orphan" reads in downstream analysis?
exome-seq alignment samtools rna-seq snp written 4.8 years ago by fernardo • 130 • updated 4.8 years ago by Devon Ryan ♦ 98k
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1.5k
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Finding miRNA motifs from Exome sequencing
sequence exome-seq mirna written 4.9 years ago by bharata1803 • 490
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1.6k
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is it possible to define a window size in ADTex CNV tool?
adtex exome-seq cnv written 5.7 years ago by ivivek_ngs • 5.0k
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3.7k
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VarScan output different when choosing VCF and variant missing?
variant calling varscan vcf exome-seq written 5.9 years ago by Pascal • 250
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3
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2.3k
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7 follow
3
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exome cnv analysis of cases only
case exome-seq cnv written 6.5 years ago by peris • 120 • updated 6.1 years ago by Vivek Todur • 50
4
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1.9k
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cn.mops error - Help !
cn.mops exome-seq r-bioconductor granges written 6.7 years ago by poisonAlien • 3.0k • updated 6.6 years ago by Biostar ♦♦ 20
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