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Biostar ♦♦ 20
Recent Votes
- Orientation of reads in .fastq files from RNA-Seq
- Orientation of reads in .fastq files from RNA-Seq
- C: Cytoscape: is there a way to export selected sequences into a fasta file?
- A: Cytoscape: is there a way to export selected sequences into a fasta file?
- C: ATAC-seq sample normalization (quantil normalization)
- C: [cph] Error in `[.default`(y, , 3) : subscript out of bounds
- C: [cph] Error in `[.default`(y, , 3) : subscript out of bounds
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Recent Replies
-
C: Trimming out primer sequences in the middle of reads by
ricardoguerreiro2121 • 30
Hello, does your script also remove the reverse complement? Do I find it within the BBmap scripts?
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A: Cytoscape: is there a way to export selected sequences into a fasta file? by
scooter • 140
Indeed, we do monitor Biostars :-) Where are you getting your sequence similarity network? If t...
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C: [cph] Error in `[.default`(y, , 3) : subscript out of bounds by
russhh • 5.0k
find out what is throwing the error: use debug(cph) , then make your cph call as above, and step ...
-
C: Running BWA mem in a for loop by
Joe ♦ 16k
I haven't tested it but you could simply capture the output. The shell should deal with all the v...
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A: Homer error, how to call homer properly in a script? and how to know that it's a by
Ankur B. Sharma • 10
You should open the findMotifsGenome.pl script and change the path to homer in your system. Hope ...
-
A: What should be reported as Hazard Ratio in Kaplan Meier curve? by
huynguyen96.dnu • 0
Sorry, but I have a question on the interpretation of HR value. According to your above result, H...
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A: Running BWA mem in a for loop by
Giovanni.madrigal12 • 130
You can do something like `for i in $(ls -1 *R1.fq.gz | sed 's/\.R1.fq.gz//'); do bwa mem -t 16...
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C: How To Update R In Ubuntu ? by
gabrielhg88 • 0
Made it work by deleting everything related to R first rm -rf /usr/local/lib/R I then used ...
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C: [cph] Error in `[.default`(y, , 3) : subscript out of bounds by
huynguyen96.dnu • 0
mod.cox <- cph(formula(Surv(OS_MONTHS, OS_STATUS) ~ CELLULARITY + MENOPAUSAL_STATE + ER_S...
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A: Consecutive Window Rna Folding by
jtimmons • 30
Hello. Reviving another close-for-a-bit BioStars thread to share that I made a DNA/RNA folding li...
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C: There are any way to use a script for feed emboss with fasta sequence? by
schlogl • 50
Thanks Joe. I appreciate you effort to help. Thank you very much.
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C: There are any way to use a script for feed emboss with fasta sequence? by
Joe ♦ 16k
You don't need everything thats in the code I linked. If you just look at the documentation/examp...
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