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Answer: java out of memory error through beagle for imutation
A: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
Could you explain the difference between STAR, KALLISTO, SALMON etc. to experimental Biologist/non-bioinformatician
Comment: Microarray pbrobe ID to gene ID problem
Answer: Microarray pbrobe ID to gene ID problem
Answer: How do I change the title font size in ViolinPlot (Seurat)
Comment: High Malat-1 expression in single cell data
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Popular Question
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ingerslev
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ATpoint
82k
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Tastulek
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sooni
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jared.andrews07
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Recent Replies
Comment: Chance for trained without experience
by
ATpoint
82k
Depends on the job. As an analyst for biological data I would never (and I say this with the experience of colalborating with people who ha…
Comment: A question about reference genome for creating the consensus sequence
by
GenoMax
142k
> I wonder how to adjust the base genome. If you are looking to make changes to the reference you used for alignment then look into http…
Comment: Phasing a mixture of two individuals' DNA with long reads
by
GenoMax
142k
We had a related discussion in a prior thread by OP: https://www.biostars.org/p/9593780/ Do you have genotype (or independent sequence) da…
Answer: TFs and Gene databases
by
b.contreras.moreira
▴ 180
I can also suggest <https://footprintdb.eead.csic.es> which links TFs to their DNA motifs, not their gene targets.
Comment: Correlation Analysis
by
manaswwm
▴ 510
How many methylation and expression values do you have per gene? If per gene you have a table named - *gene_corr*; which has two columns - …
Comment: How do I change the title font size in ViolinPlot (Seurat)
by
Assa Yeroslaviz
★ 1.8k
thx for the explanation. I did look at the function and I also read in the help page, that you get a patchwork object, only when using `co…
Comment: Percentage coverage of reference genome by de novo genome
by
Lemonhope
• 0
Thank you, I'll check out Quast!
Answer: How do I change the title font size in ViolinPlot (Seurat)
by
ATpoint
82k
Looking at the source code of the function it seems that they make individual plots with ggplot when `features` is `> 1` and then use patch…
Comment: Percentage coverage of reference genome by de novo genome
by
Lemonhope
• 0
Thank you for the response to answer you question, no, the ddRADseq data (short paired end illumina reads) for all the samples were used …
Comment: Percentage coverage of reference genome by de novo genome
by
Michael
54k
minimap2 can do this too, mummer (nucmer) is more accurate but slightly slower. If you want to do this as part of generating assembly stati…
Comment: TFs and Gene databases
by
ijarne
• 0
Thank you so much @jaredandrews07 it looks like I will be able to get what I intended with these sources !!
Comment: Percentage coverage of reference genome by de novo genome
by
Joe
21k
If you have contigs for assemblies, using read-based approaches like samtools is probably not the way to go. As you're interested in % cov…
Comment: Exploring Diet Effects in Single-Cell RNA Sequencing
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ATpoint
82k
Has data been generated in the same batch, so same day, in the same 10x runs?
Answer: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C
by
Michael
54k
So I am assuming you have calculated a Burrows-Wheeler transform, then add the FM-index for the first and last column of the BW-matrix. I r…
Comment: STAR aligner error
by
M.
▴ 30
I already told them but they couldn't come up with a useful solution :/
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