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4
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204
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5 follow
1
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Why the list of genes in UCSC "knownGene" table is strikingly different than the list of genes in UCSC "known canonical" table?
bed ucsc tablebrowser hg19 written 22 days ago by bioExplorer ♦ 3.7k
5
votes
1
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107
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1
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Different results from biomaRt query and search in GTF
R biomart annotation transcripts hg19 written 23 days ago by lizaveta • 0 • updated 23 days ago by Emily_Ensembl ♦ 17k
0
votes
1
answer
89
views
1
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Annotation file of piRNAs
mm10 pirna ncrna gtf / gff3 hg19 written 5 weeks ago by ilovesuperheroes1993 • 0 • updated 5 weeks ago by genomax ♦ 64k
9
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0
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1.1k
views
7 follow
0
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Hapmap 3 in hg19/GRCh37 plink format PED and MAP
hapmap 3 hg18 map ped hg19 written 12 months ago by Shicheng Guo • 7.4k
2
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0
answers
117
views
0
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Using hg38 assembly with hg19 exome capture data
genome sequence alignment hg38 hg19 written 6 weeks ago by jdm204 • 0
1
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1
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111
views
1
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genetic coordinates hg19/GRCh37 latest version
gene grch37 coordinates refseq hg19 written 6 weeks ago by cocchi.e89 • 10
2
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0
answers
116
views
0
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Updated Alignment of current refseq transcripts against hg19
genome refseq alignment vep hg19 written 6 weeks ago by cruckert • 0
0
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0
answers
127
views
0
answers
Problem with Jannovar and downloading hg19 db
jannovar hg19 annotation written 10 weeks ago by bwczech • 60
1
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2
answers
165
views
2
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Finding and changing a given position in hg19 ref fasta file
fasta reference hg19 written 3 months ago by cetin.m • 20
5
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1
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2.3k
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1
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TCGA CNV/SNP6 Reference Sequence - hg19
tcga reference genome snp cnv hg19 written 4.5 years ago by dirigible2012 • 310 • updated 3 months ago by Biostar ♦♦ 20
0
votes
1
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791
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1
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Bowtie error: Could not locate a Bowtie index corresponding to basename
alignment chip-seq bowtie single-end hg19 written 7 months ago by cilgaiscan • 50 • updated 7 months ago by h.mon ♦ 24k
12
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2
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269
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6 follow
2
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why do bed files not contain information about the reference?
bed hg38 reference hg19 written 7 months ago by Marvin • 140 • updated 7 months ago by Friederike ♦ 3.3k
17
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4
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5.5k
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9 follow
4
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Convert Wiggle File From Hg18 To Hg19
wiggle conversion hg19 written 5.5 years ago by zhouchan99 • 10 • updated 7 months ago by Alex Reynolds ♦ 27k
13
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2
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1.7k
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9 follow
2
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What is the difference between GRCh37 and hs37? And hg19?
assembly hg19 hg38 reference genome hs37 written 8 months ago by juanfdelahoz • 20
4
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0
answers
503
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7 follow
0
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FeatureCounts on HG38
refseq star rna-seq hg19 written 8 months ago by elb • 160 • updated 8 months ago by h.mon ♦ 24k
6
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2
answers
12k
views
2
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Gff Or Bed File For Hg19 Genome
genome seq gff hg19 written 5.6 years ago by rob.costa1234 • 150 • updated 10 months ago by h.mon ♦ 24k
0
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1
answer
1.7k
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1
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Finding hg19 coordinates for primers to make BED file
primers coordinates hg19 written 3.2 years ago by adnan.haider.ra • 10 • updated 11 months ago by bioinfo89 • 40
5
votes
1
answer
492
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6 follow
1
answer
increase BWA sensitivity
metagenomics bwa hg19 written 12 months ago by sacha • 1.7k • updated 12 months ago by h.mon ♦ 24k
4
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1
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1.1k
views
1
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hg19 exome reference and index
exome hg19 reference index written 13 months ago by genomics Newbie • 20 • updated 13 months ago by Kevin Blighe ♦ 39k
3
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1
answer
767
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1
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GRCh37/hg19 human genome sequences from NCBI
ncbi hg19 written 15 months ago by KVC_bioinfo • 350 • updated 15 months ago by Jean-Karim Heriche ♦ 18k
0
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0
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549
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0
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Looking for WIG base coverage file for hg19 to call CNVs in Exome data using EXCAVATOR
exome excavator wig cnv hg19 written 16 months ago by bioinforesearchquestions • 200
6
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1
answer
603
views
1
answer
Tell Canonical Isoform/Trancsript in gencode
canonical isoform grch37.hg19 gencode hg19 written 17 months ago by mollitz • 20 • updated 17 months ago by Emily_Ensembl ♦ 17k
2
votes
1
answer
702
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1
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[hg19] Reading genes with CCDS
grch37 coordinates ccds hg19 written 18 months ago by mollitz • 20 • updated 18 months ago by Satyajeet Khare • 1.3k
2
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1
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2.2k
views
1
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HG19 Annotation download with Gene Names.
genome annotation hg19 bed igv written 18 months ago by clear.choi • 30 • updated 18 months ago by genecats.ucsc • 560
1
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0
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723
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0
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GTF file problem
gtf hg38 rna-seq hg19 written 20 months ago by johnsonn573 • 0
8
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2
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3.1k
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2
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Is 'hg19' the same as 'Human Genome Reference 38' ?
genome alignment grch38 hg19 sequencing written 20 months ago by ycsm • 10 • updated 20 months ago by skim • 30
7
votes
1
answer
2.5k
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1
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List of all known enhancers in human genome
enhancers hg19 written 3.0 years ago by jennifer rondineau • 20 • updated 20 months ago by Biostar ♦♦ 20
6
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1
answer
813
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1
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HeLa reference fasta
reference hela hg19 written 21 months ago by Sergio Martínez Cuesta • 60
1
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1
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1.2k
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1
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List of house keeping genes for hg19
house keeping genes hg19 written 22 months ago by manali.rupji • 0 • updated 22 months ago by Santosh Anand ♦ 4.6k
0
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0
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1.5k
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0
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Reference Transcriptome for hg19
salmon transcriptome reference rna-seq hg19 written 23 months ago by stefanos.bamopoulos • 30
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