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GTF file problem
gtf hg38 rna-seq hg19 written 2 days ago by johnsonn573 • 0
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2
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196
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2
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Is 'hg19' the same as 'Human Genome Reference 38' ?
genome alignment grch38 hg19 sequencing written 6 days ago by ycsm • 10 • updated 6 days ago by skim • 20
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1
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912
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1
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List of all known enhancers in human genome
enhancers hg19 written 16 months ago by jennifer rondineau • 20 • updated 11 days ago by Biostar ♦♦ 20
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1
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165
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1
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HeLa reference fasta
reference hela hg19 written 5 weeks ago by Sergio Martínez Cuesta • 10
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1
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194
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1
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List of house keeping genes for hg19
house keeping genes hg19 written 11 weeks ago by manali.rupji • 0 • updated 11 weeks ago by Santosh Anand • 2.7k
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271
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Reference Transcriptome for hg19
salmon transcriptome reference rna-seq hg19 written 3 months ago by stefanos.bamopoulos • 30
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170
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Where can I find the HVR coordinates of mitochondrial DNA on the human genome?
hypervariable regions mtdna hg19 haplogroup chrm written 3 months ago by Glen • 0
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1
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306
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1
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Comparing variants in vcf files that have been mapped to GRCh37 and GRCh38
vcf hg38 hg19 written 4 months ago by cl10101 • 40 • updated 4 months ago by Pierre Lindenbaum ♦ 96k
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189
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Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ggbio ucsc gviz hg19 written 5 months ago by maden.sean • 20
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Get hg19 coordinates of SNPs from gwas catalog
gwas catalog hg19 written 2.6 years ago by misconstruction • 20 • updated 6 months ago by Jack • 60
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400
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Low counts with htseq-count?
htseq-count cufflinks hg19 written 7 months ago by longoka • 10
3
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1
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1
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Hg19 Strand Information Of Sam Output.
illumina paired-end sam hg19 written 3.4 years ago by Coryza • 20 • updated 10 months ago by Biostar ♦♦ 20
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253
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reference genome for TFBS
ensembl tfbs hg19 written 10 months ago by mariameldova • 0
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5 follow
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Problems With Mirdeep2
reference hg19 written 4.6 years ago by pmuench • 120 • updated 11 months ago by gzl • 20
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1
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1
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Get gVCF file from genome coordinates
gvcf coorinates hg19 written 11 months ago by Paul • 620 • updated 11 months ago by WouterDeCoster ♦ 20k
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1
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376
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1
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UCSC Liftover from hg19 to chimp changes segment lengths
chimpanzee liftover hg19 written 11 months ago by sskvera • 0
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655
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Best way to fill VCF with ancestral allele info AA for each SNP hg19
ancestral allele vcf gatk hg19 written 15 months ago by tcgp • 0 • updated 13 months ago by Biostar ♦♦ 20
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616
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Map ensembl gene id form hg38 in hg19
sequencing hg38 hg19 written 13 months ago by Tanvir Ahamed • 220
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1
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416
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1
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new regions in GRCh38
grch37 grch38 reference human hg19 written 13 months ago by skanterakis • 50
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2
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684
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2
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hg18 vs hg19 in SNP6.0 data
hg19 ascat hg18 penncnv snp6.0 written 15 months ago by chloe.steen • 120
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1
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395
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1
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Problem with human_g1k_v37
reference genome human_g1k_v37 hg19 written 14 months ago by martyferr90 • 10
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2
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2
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Calculate binned methylation data throughout hg19 with BEDOPS
bedops methylation data hg19 written 18 months ago by thefirstrealace • 30 • updated 15 months ago by Shicheng Guo • 4.4k
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1
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1
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SNP coordinate systems in UCSC LiftOver (hg19), NCBI Remap (GRCh37(hg19)) and dbSNP (GRCh38(hg38))
dbsnp hg19 remap snp grch38(hg38) written 15 months ago by curious • 30 • updated 15 months ago by WouterDeCoster ♦ 20k
2
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1
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480
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1
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Extract genotype from hg19
hg19 written 17 months ago by Helene • 370 • updated 17 months ago by Chris Fields • 1.7k
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3
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657
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3
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Could you explain the percentage of A, C , G, T in hg19 ?
percent gc hg19 written 18 months ago by sacha • 770
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1
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533
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1
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How to identify which genes fall within genomic locations
genomic location hg19 written 17 months ago by BioProg • 0 • updated 17 months ago by Alex Reynolds ♦ 19k
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1
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Finding hg19 coordinates for primers to make BED file
primers coordinates hg19 written 19 months ago by adnan.haider.ra • 10 • updated 19 months ago by igor • 4.4k
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Gff Or Bed File For Hg19 Genome
genome seq gff hg19 written 3.9 years ago by rob.costa1234 • 100 • updated 19 months ago by Jorge Amigo ♦ 9.8k
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liftOver error: not reading the coordinate position correctly?
hg18 snp liftover hg19 written 2.6 years ago by Neal • 40 • updated 19 months ago by morovatunc • 360
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Genome Coordinates Between Assemblies: Liftover A Snp Array
array assembly snp liftover hg19 written 3.4 years ago by Jimbou • 560
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