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<prev • 99 results • page 1 of 4 • next >
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How to specify pipelines(muse, mutect,...) in TCGAbiolinks when you want to use hg19?
tcgabiolinks pipelines selection mutations hg19 written 16 days ago by nazaninhoseinkhan • 390
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Any changes to the frequencies of gnomAD v2.1 liftover ?
hg38 gnomad liftovert hg19 written 23 days ago by badredda • 130
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Is there any way to download knownCanonical set from the NCBI Refseq track as it is possible for the UCSC track ?
table browser ucsc canonical refseq hg19 written 5 weeks ago by lakhujanivijay ♦ 4.7k • updated 29 days ago by jnavarr5 • 10
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93
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Hg19 version based on bam file contigs?
hg19 written 6 weeks ago by vctrm67 • 10
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158
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benefit of transfering hg19 vcf to hg38 vcf
vcf hg38 hg19 written 10 weeks ago by Shicheng Guo • 8.0k
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Hapmap3 in hg19/GRCh37 plink format PED and MAP
hapmap 3 hg18 map ped hg19 written 23 months ago by Shicheng Guo • 8.0k
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125
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Human genome with masked endogenous viral sequences
hg38 hg19 endogenous masked virus written 5 months ago by inaciogmedeiros • 10
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206
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snpEff Error - Stop progressing after Predicting variants
snpeff hg19 written 7 months ago by woojoy14 • 0
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patients hg19 VEP Fasta and CACHE GRCh37
ensembl grch37 vep hg19 written 10 months ago by cocchi.e89 • 40 • updated 8 months ago by Biostar ♦♦ 20
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439
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hg19 interval list
genome gatk interval hg19 written 9 months ago by Nicolas Rosewick ♦ 8.6k
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8 follow
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Why the list of genes in UCSC "knownGene" table is strikingly different than the list of genes in UCSC "known canonical" table?
bed ucsc tablebrowser hg19 written 11 months ago by lakhujanivijay ♦ 4.7k
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Different results from biomaRt query and search in GTF
R biomart annotation transcripts hg19 written 11 months ago by lizaveta • 0 • updated 11 months ago by Emily_Ensembl ♦ 20k
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1
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417
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Annotation file of piRNAs
mm10 pirna ncrna gtf / gff3 hg19 written 12 months ago by ilovesuperheroes1993 • 0 • updated 12 months ago by genomax ♦ 78k
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552
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Using hg38 assembly with hg19 exome capture data
genome sequence alignment hg38 hg19 written 12 months ago by jdm204 • 10
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genetic coordinates hg19/GRCh37 latest version
gene grch37 coordinates refseq hg19 written 12 months ago by cocchi.e89 • 40
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439
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Updated Alignment of current refseq transcripts against hg19
genome refseq alignment vep hg19 written 12 months ago by cruckert • 10
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315
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Problem with Jannovar and downloading hg19 db
jannovar hg19 annotation written 13 months ago by misterie • 90
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380
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Finding and changing a given position in hg19 ref fasta file
fasta reference hg19 written 14 months ago by cetin.m • 40
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TCGA CNV/SNP6 Reference Sequence - hg19
tcga reference genome snp cnv hg19 written 5.4 years ago by dirigible2012 • 310 • updated 14 months ago by Biostar ♦♦ 20
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Bowtie error: Could not locate a Bowtie index corresponding to basename
alignment chip-seq bowtie single-end hg19 written 18 months ago by cilgaiscan • 50 • updated 18 months ago by h.mon ♦ 29k
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6 follow
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why do bed files not contain information about the reference?
bed hg38 reference hg19 written 18 months ago by Marvin • 150 • updated 18 months ago by Friederike ♦ 5.2k
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9 follow
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Convert Wiggle File From Hg18 To Hg19
wiggle conversion hg19 written 6.4 years ago by zhouchan99 • 10 • updated 18 months ago by Alex Reynolds ♦ 29k
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13 follow
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What is the difference between GRCh37 and hs37? And hg19?
assembly hg19 hg38 reference genome hs37 written 19 months ago by juanfdelahoz • 50
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7 follow
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FeatureCounts on HG38
refseq star rna-seq hg19 written 19 months ago by elb • 170 • updated 19 months ago by h.mon ♦ 29k
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Gff Or Bed File For Hg19 Genome
genome seq gff hg19 written 6.5 years ago by rob.costa1234 • 200 • updated 21 months ago by h.mon ♦ 29k
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Finding hg19 coordinates for primers to make BED file
primers coordinates hg19 written 4.1 years ago by adnan.haider.ra • 10 • updated 22 months ago by bioinfo89 • 40
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896
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6 follow
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increase BWA sensitivity
metagenomics bwa hg19 written 23 months ago by sacha • 1.9k • updated 23 months ago by h.mon ♦ 29k
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hg19 exome reference and index
exome hg19 reference index written 2.1 years ago by genomics Newbie • 20 • updated 2.1 years ago by Kevin Blighe ♦ 54k
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GRCh37/hg19 human genome sequences from NCBI
ncbi hg19 written 2.2 years ago by KVC_bioinfo • 410 • updated 2.2 years ago by Jean-Karim Heriche ♦ 21k
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Looking for WIG base coverage file for hg19 to call CNVs in Exome data using EXCAVATOR
exome excavator wig cnv hg19 written 2.3 years ago by bioinforesearchquestions • 270
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