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19
votes
5
answers
8.2k
views
11 follow
5
answers
Convert Wiggle File From Hg18 To Hg19
wiggle conversion hg19 written 7.4 years ago by zhouchan99 • 10 • updated 7 weeks ago by Qiongyi • 100
0
votes
2
answers
3.0k
views
2
answers
How Do I Convert Hg19 Gvf To Hg18 Gvf Using Ucsc Liftover Tool
liftover hg19 written 8.7 years ago by gupta.ne • 0 • updated 4 months ago by Biostar ♦♦ 20
0
votes
1
answer
315
views
1
answer
panel of normal files
gatk panel-of-normal hg38 mutect2 hg19 written 8 months ago by cocchi.e89 • 120 • updated 4 months ago by L_LANKA • 0
3
votes
1
answer
1.9k
views
1
answer
Hg19 Strand Information Of Sam Output.
illumina paired-end sam hg19 written 6.9 years ago by Coryza • 30 • updated 4 months ago by Biostar ♦♦ 20
0
votes
0
answers
266
views
0
answers
visualizing mutational data using Maftools for reference genome hg19
visualize maftools snv hg19 written 4 months ago by nazaninhoseinkhan • 410
0
votes
0
answers
230
views
0
answers
LiftOver CNA data from Hg19 to Hg38
cna ncbiremapper hg38 liftover hg19 written 5 months ago by afollette • 0 • updated 5 months ago by GenoMax ♦ 94k
4
votes
1
answer
666
views
1
answer
RTG vcfeval: number of variants reported by vcfeval is not equal to actual number of variants.
vcfeval validation rtg hg19 written 8 months ago by c.clarido • 70 • updated 6 months ago by Len Trigg • 1.5k
5
votes
1
answer
609
views
5 follow
1
answer
Converting SNPs from hg19 to hg38
hg38 dbsnp summary statistics liftover hg19 written 7 months ago by ika • 40 • updated 7 months ago by brunobsouzaa • 490
1
vote
1
answer
1.9k
views
1
answer
Rna-Seq Cancer Cell Line, Hg19 Or Cancer Cell Line Genome?
hg19 rna-seq cancer written 6.8 years ago by QVINTVS_FABIVS_MAXIMVS • 2.4k • updated 7 months ago by Biostar ♦♦ 20
1
vote
1
answer
346
views
1
answer
SNP to CHR:POS mapping: dealing with genome patches
genome identifier biomart snp hg19 written 10 months ago by petar.v.todorov • 10 • updated 10 months ago by Ben_Ensembl • 1.6k
2
votes
1
answer
235
views
1
answer
twoBitToFa retrieving longer sequence than expected in hg19
twobittofa hg19 written 10 months ago by biosol • 150 • updated 10 months ago by wm • 490
0
votes
0
answers
242
views
0
answers
How to specify pipelines(muse, mutect,...) in TCGAbiolinks when you want to use hg19?
tcgabiolinks pipelines selection mutations hg19 written 11 months ago by nazaninhoseinkhan • 410
1
vote
0
answers
255
views
0
answers
Any changes to the frequencies of gnomAD v2.1 liftover ?
hg38 gnomad liftovert hg19 written 11 months ago by δΉ™ • 180
1
vote
1
answer
718
views
1
answer
Is there any way to download knownCanonical set from the NCBI Refseq track as it is possible for the UCSC track ?
table browser ucsc canonical refseq hg19 written 12 months ago by lakhujanivijay ♦ 5.3k • updated 12 months ago by jnavarr5 • 10
1
vote
1
answer
330
views
1
answer
Hg19 version based on bam file contigs?
hg19 written 12 months ago by vctrm67 • 20
3
votes
1
answer
335
views
1
answer
benefit of transfering hg19 vcf to hg38 vcf
vcf hg38 hg19 written 13 months ago by Shicheng Guo • 8.5k
11
votes
1
answer
2.7k
views
8 follow
1
answer
Hapmap3 in hg19/GRCh37 plink format PED and MAP
hapmap 3 hg18 map ped hg19 written 2.8 years ago by Shicheng Guo • 8.5k
1
vote
0
answers
258
views
0
answers
Human genome with masked endogenous viral sequences
hg38 hg19 endogenous masked virus written 16 months ago by inaciogmedeiros • 10
0
votes
0
answers
478
views
0
answers
snpEff Error - Stop progressing after Predicting variants
snpeff hg19 written 18 months ago by woojoy14 • 0
0
votes
0
answers
761
views
0
answers
patients hg19 VEP Fasta and CACHE GRCh37
ensembl grch37 vep hg19 written 21 months ago by cocchi.e89 • 120 • updated 19 months ago by Biostar ♦♦ 20
1
vote
1
answer
1.1k
views
1
answer
hg19 interval list
genome gatk interval hg19 written 21 months ago by Nicolas Rosewick ♦ 9.3k
7
votes
1
answer
1.8k
views
8 follow
1
answer
Why the list of genes in UCSC "knownGene" table is strikingly different than the list of genes in UCSC "known canonical" table?
bed ucsc tablebrowser hg19 written 23 months ago by lakhujanivijay ♦ 5.3k
5
votes
1
answer
710
views
1
answer
Different results from biomaRt query and search in GTF
R biomart annotation transcripts hg19 written 23 months ago by lizaveta • 0 • updated 23 months ago by Emily_Ensembl ♦ 21k
0
votes
1
answer
773
views
1
answer
Annotation file of piRNAs
mm10 pirna ncrna gtf / gff3 hg19 written 23 months ago by ilovesuperheroes1993 • 0 • updated 23 months ago by GenoMax ♦ 94k
4
votes
0
answers
1.0k
views
0
answers
Using hg38 assembly with hg19 exome capture data
genome sequence alignment hg38 hg19 written 23 months ago by jdm204 • 10
1
vote
1
answer
1.5k
views
1
answer
genetic coordinates hg19/GRCh37 latest version
gene grch37 coordinates refseq hg19 written 23 months ago by cocchi.e89 • 120
3
votes
0
answers
752
views
0
answers
Updated Alignment of current refseq transcripts against hg19
genome refseq alignment vep hg19 written 23 months ago by cruckert • 10
0
votes
0
answers
496
views
0
answers
Problem with Jannovar and downloading hg19 db
jannovar hg19 annotation written 2.0 years ago by misterie • 90
2
votes
2
answers
568
views
2
answers
Finding and changing a given position in hg19 ref fasta file
fasta reference hg19 written 2.1 years ago by cetin.m • 50
5
votes
1
answer
2.8k
views
1
answer
TCGA CNV/SNP6 Reference Sequence - hg19
tcga reference genome snp cnv hg19 written 6.3 years ago by dirigible2012 • 320 • updated 2.1 years ago by Biostar ♦♦ 20
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