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Hicexplorer error using hicBuildMatrix: no such file as qc_template.html

hicexplorer written 9 weeks ago by h.long • 20 • updated 4 days ago by Biostar ♦♦ 20

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343

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Output from HiCExplorer hicFindTADs TAD_score

hicexplorer written 12 months ago by Eichan • 10

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595

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TAD calling with HiCExplorer - TypeError in hicFindTADs TAD_score

hicexplorer written 12 months ago by mzuer • 0

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346

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hicCorrectMatrix npx not supported

hicexplorer written 12 months ago by lea.jessop • 0 • updated 12 months ago by Devon Ryan ♦ 84k

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Recent Replies

A: Subsetting large list of SNPs with R by zx8754 ♦ 5.0k
We can use ***data.table::foverlaps***, see example: # example input snp <- read.tabl...
C: filtering the reads based on the length by cpad0112 • 9.0k
Try with [seqkit][1]: seqkit seq -m 21 in.fq/in.fastq [1]: https://bioinf.shenwei.me/seq...
C: Efficient way to convert several lists into a present/absent binary format? by Kevin Blighe ♦ 28k
Note that functionality may be unexpected if your genes are encoded as factors. They should be en...
C: Efficient way to convert several lists into a present/absent binary format? by Kevin Blighe ♦ 28k
Are you sure? I think that it does assign TRUE for the 'F' in col2. Here is another example: ...
C: filtering the reads based on the length by Pierre Lindenbaum ♦ 112k
https://www.biostars.org/p/66996/
C: mysql query output by Pierre Lindenbaum ♦ 112k
faster: awk '{printf("select chrom,chromStart+1,name,alleles from snp150 where name= \"%s\";...
C: TCGA clinical feature meaning of "pct_tumor_invasion" for TCGA-UCEC project (Ute by Kevin Blighe ♦ 28k
**Update 24th September 2018:** Yet another updated answer, with further information: https://ww...
C: How to get CDE ID corresponds to each column feature of clinical data from TCGA by Kevin Blighe ♦ 28k
**Update 24th September 2018:** Yet another updated answer, with further information: https://ww...
C: Aligning miRNA reads to miRbase by Buffo • 1.1k
$cat hairpin.fa mature.fa > both.fa
A: TCGA patient variable data dictionary by Kevin Blighe ♦ 28k
There are different ways to do this. # first way First, see my previous answers, here: - http...
C: Subsetting large list of SNPs with R by ATpoint ♦ 7.5k
You should have a look at the `GenomicRanges` package from Bioconductor. Transform both the DFs t...
C: Aligning miRNA reads to miRbase by glady • 230
Which file should we consider to create an index? miRbase mature or hairpin file? In the above co...

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