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Recent Replies
Comment: gene expression of specifics gene
by
Bioinformatics1
•
0
The question you replied was relevant to pathway analysis.
I have gene expression for diabetes, but I am not sure can I use gse16873 or no…
Comment: error related to vcfstats
by
Ram
34k
Does vcfstats have a github repo? You may want to browse through and if necessary, open an issue there.
Comment: error related to vcfstats
by
rheab1230
▴
10
I did the above.
but I am still getting error.
Traceback (most recent call last):
File "/opt/ohpc/pub/libs/gnu8/numpy/1.15.3…
Comment: error related to vcfstats
by
Ram
34k
In my experience, mixing pip with conda hasn't always played out well. You may want to `conda install numpy` to make sure everyone knows wh…
Comment: Computational Biologist - Versiti Blood Research Institute
by
Ram
34k
Please edit your post and add the job location (City, Country) to the title. Right now, there is no way to know where the job is located wi…
Comment: convert detailed alignment format to fasta
by
Pierre Lindenbaum
137k
an example of output is needed.
Comment: Orthology, sequence similarity, and conservation of function
by
Dunois
★
1.3k
Many thanks for the link to this book!!
I am still reading, and I have a lot of information to digest. It also addresses some of the aspec…
Answer: PLINK ASSOC : Skipping --assoc/--model since less than two phenotypes are prese
by
chrchang523
8.3k
The IIDs aren't identical between your two files.
Comment: individual-level allele frequencies
by
chrchang523
8.3k
Sorry to be the bearer of bad news, but if you're looking for "individual-level allele frequencies" on a genotype callset, you're almost ce…
Comment: Exception in thread "main" htsjdk.samtools.util.SequenceUtil$SequenceListsDiffer
by
Pierre Lindenbaum
137k
> Could you tell me what kind of files I should use as a reference?
As I said, the reference file that was used to map the bam.
Comment: Exception in thread "main" htsjdk.samtools.util.SequenceUtil$SequenceListsDiffer
by
bill
•
0
Thank you for the answer
The script provided in the article suggests that I add my own reference genome
> # PICARD - v2.1.1 # user needs…
Comment: Mapping taxonomy ID to virus host
by
Jagoda
•
0
I have names for my species, just trying to get hosts as well.
Comment: I am converting the fq.gz. files (which are the results of the mgi study) to bam
by
GenoMax
104k
Please use `ADD REPLY/ADD COMMENT` when replying to existing posts. Do not use `SUBMIT ANSWER` unless you are posting a new answer for orig…
Comment: I am converting the fq.gz. files (which are the results of the mgi study) to bam
by
canavar
•
0
to index the file:
samtools index 111414_L01_41_1.sorted.bam
and after that there comes `rm` and `cp` phases
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