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Output from HiCExplorer hicFindTADs TAD_score

hicexplorer written 13 days ago by Eichan • 10

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TAD calling with HiCExplorer - TypeError in hicFindTADs TAD_score

hicexplorer written 19 days ago by mzuer • 0

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hicCorrectMatrix npx not supported

hicexplorer written 14 days ago by lea.jessop • 0 • updated 14 days ago by Devon Ryan ♦ 70k

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Recent Replies

C: Technical replicates in RNAseq by grant.hovhannisyan • 230
Agree and I think what important is not the seq. depth itself and the numbers we get, but rather ...
A: fpkm to tpm conversion by lucianalpt • 0
https://haroldpimentel.wordpress.com/2014/05/08/what-the-fpkm-a-review-rna-seq-expression-units/
A: fpkm to tpm conversion by lucianalpt • 0
Actually, you can convert in R by the function I got from another forum and used. fpkmToTpm <...
C: Technical replicates in RNAseq by Kevin Blighe • 890
...indeed, as is always the case in bioinformatics and research! :) The reason why there are dif...
C: Why genomic information shown in UCSC/Ensembl browser for a specific gene is dif by Denise - Open Targets • 4.0k
Can you give us some examples of genes whose coordinates from the bed file don't match what you s...
C: Technical replicates in RNAseq by grant.hovhannisyan • 230
Technical replicates in my case will be the same library sequenced on the same machine but on the...
C: Technical replicates in RNAseq by Macspider • 1.4k
How are you losing on it? - if you are sequencing the same sample twice in the same run, the t...
C: Technical replicates in RNAseq by Macspider • 1.4k
But the amount of sequenced reads has to be connected to the amount of transcripts that you have ...
C: Polish PacBio assembly with latest PacBio tools : an affordable solution for eve by Kevin Blighe • 890
Thanks so much Roxane - that's really great and will be helpful for the future! I may be using Pa...
C: SNPs; entrez utilities by WouterDeCoster ♦ 21k
I added markup to your post for increased readability and fixing the strikethrough problem. You c...
C: Technical replicates in RNAseq by grant.hovhannisyan • 230
Glad to see a constructive scientific discussion here :)
C: SNPs; entrez utilities by deepak.k.choubey • 10
For some reason, the lines have gotten strikethrough. Pease ignore the strikethroughs and help me...

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