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Installing and running pyGenomeTracks

pygenometracks deeptools hicmatrix hicexplorer written 28 days ago by rbronste • 200 • updated 7 days ago by Biostar ♦♦ 20

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what is the lowest computer set up for hicBuildmatrix?

hicbuildmatrix hicexplorer written 21 days ago by foxjuly • 0

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hicPlotMatrix memory error

hicplotmatrix hicexplorer written 21 days ago by foxjuly • 0

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123

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How to use hicFindEnrichedContacts?

hicexplorer written 7 weeks ago by sara.a.grimm • 10

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Hicexplorer error using hicBuildMatrix: no such file as qc_template.html

hicexplorer written 3 months ago by h.long • 20 • updated 7 weeks ago by Biostar ♦♦ 20

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397

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Output from HiCExplorer hicFindTADs TAD_score

hicexplorer written 14 months ago by Eichan • 10

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649

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TAD calling with HiCExplorer - TypeError in hicFindTADs TAD_score

hicexplorer written 14 months ago by mzuer • 0

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369

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hicCorrectMatrix npx not supported

hicexplorer written 14 months ago by lea.jessop • 0 • updated 14 months ago by Devon Ryan ♦ 86k

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Recent Replies

A: SRA files bulk downloads by S AR • 30
I tried to fetch one id: prefetch ERR133900 After 15 mins or so it gave this log messages ...
C: Jupyter Notebook reading in data by Alex Reynolds ♦ 26k
Post code. You can post your notebook on Github for free, for instance.
C: SRA files bulk downloads by S AR • 30
Hi ATpoint, Sorry i was out of country to attend a conference and i tried it today.. And yes it ...
C: Transcriptomic profile fluctuation between different time point by CY • 210
My 'time point' is exactly the time point of sample get extracted. Specifically, I am curious abo...
C: Python script for generating Genomic windows of intervals 50kbp for Human refere by nk778 • 0
Thank you so much for your help. Realy appreciate it. I will give it a try. Thanks once again
C: Struggling to filter data with R, tidyverse by RamRS ♦ 19k
It would be easier to visualize if you gave us some sample data. Check out [this post][1] on how ...
A: How to calculate Hudson's Fst at Population and SNP level? by Mr Locuace • 80
https://www.rdocumentation.org/packages/KRIS/versions/1.1.1/topics/fst.each.snp.hudson
C: About TCGA CNV data preprocessing by Django • 20
I think the Error code means there is no element in "sample.tmp". And which() will return nothing.
C: Simple integrative DNA methylation and mRNA expression analysis by Will • 0
No, my teacher is biology teacher is not specialised in bioinformatics, I knew my project would b...
C: How to perform SOAPdenovo for many samples by RamRS ♦ 19k
Why is this a `blog` type post? Please read: https://www.biostars.org/p/180013/
C: How to identify which SNPs in my dataset are genome wide significant by sean.oscineir2 • 0
Not single SNPs however the presence of multiple SNPs associated with disease can be genome wide ...
C: How to identify which SNPs in my dataset are genome wide significant by h.mon ♦ 21k
Can a SNP be genome-wide significant? What exactly do you mean?

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