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Answer: How do I create a gff(3) file from a genebank file?
Find groups of SNP in a multi sample VCF with bcftools
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Answer: Crac: Funny And/Or Weird Names For Bioinformatics Tools
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glenn.hickey
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`vg call` reports variants in the graph that are supported by read mappings to the graph, outputting in VCF format. It does not handle nove…
Answer: How do I create a gff(3) file from a genebank file?
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@ialbert I tried to use bio gff to convert a genebank file into a gff, it produced this error: TypeError: '>' not supported between instan…
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Something with 4 mutations need not be worse than something with 1. It depends on the effects of those mutations as well as other mitigatin…
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The spambot marked your post as spam - I've restored it. It is a bit off topic but I think can be accommodated under the broad umbrella of …
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No problem - happy to help!
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Yes I did changed it to the actual problem, because I agreed that the problem did not align with the title as you also mentioned. If you ha…
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Following up on the above; many of the authors of this paper have now just published a new pre-print [Comprehensive analysis of microbial …
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Ah, thank you! You're right--I hadn't noted that in the bowtie2 report before. With the NCBI genome, the alignment rates are around 50-70% …
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Do not use the `Forum` classification for this post since that is meant for discussion for open-ended questions. You are looking for a posi…
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Have you looked at the Seurat vignettes for guidance? Edit: this vignette in particular goes through analysing Visium data https://satija…
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> VG view and VG chunk failed when using SequenceTubeMap You changed the title to the latest problem you are encountering, which does not …
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Hi @atpoint thank for suggestion and advice, I will try!
Answer: VG view and VG chunk failed when using SequenceTubeMap
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Hey everyone, I wanted to thank you all for your immediate responses and insights. You're absolutely right about the misleading title, and…
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Thanks for the explanation. I have already provided a code in a previous post. https://www.biostars.org/p/9595734/ In this post, my co…
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Reaper works on barcodes in the sequence, not in the header. I don't know if any tool that can do this out of the box. Might need to be a…
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