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Recent Replies
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A: Subset Function in Ballgown by
zhhxu9 • 10
You need to do this for subsetting different group of samples: bg_ifungis_Earth = subset(bg_...
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C: R script to download all abstracts of Nature in 2020 from Pubmed by
genomax ♦ 85k
You should consider accepting @Alex's answer in that case, since it must work and it gave you the...
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C: Snakemake - moving, re-naming, unzipping and merging files for downstream analys by
cschu181 • 2.3k
Additionally, if wildcards.sample.endswith('.fastq') == True: should be: if wildcards....
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C: Snakemake - moving, re-naming, unzipping and merging files for downstream analys by
cschu181 • 2.3k
I don't know pandas (seems to be overkill to use this for parsing a simple two-column table), but...
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C: How to identify the bp distance of blast results to closest genes in a genome by
FatihSarigol • 160
thanks! though if you meant it works directly, probably something is odd about my blastplus versi...
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C: Script makes different file then the manual command, but the command is the same by
cschu181 • 2.3k
Just to ensure: there is actual output in the blastresults.txt?
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C: bash script for catenating many paired end files by
cschu181 • 2.3k
cat *_1.fastq > concatenated_1.fastq cat *_2.fastq > concatenated_2.fastq should d...
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C: Script makes different file then the manual command, but the command is the same by
lieven.sterck ♦ 7.9k
OK, let's take this from the top: - can you do (& post result) `pwd` in the directory wher...
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C: Fastq-dump timeout exhausted error by
ATpoint ♦ 36k
See https://www.biostars.org/p/366721/ and https://www.biostars.org/p/325010/
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A: R script to download all abstracts of Nature in 2020 from Pubmed by
Shicheng Guo • 8.2k
Find another way as good as @Alex Nesmelov's proposal. Thanks Alex Nesmelov! library(easyPub...
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C: bash script for catenating many paired end files by
ATpoint ♦ 36k
> I'm not much familiar with bash script. This is a key skill for any analyst. Please try so...
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C: Can not work with a text file in script by
5heikki ♦ 8.8k
How is it possible to have two files with the same name in the same directory?
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