one-liner Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: one-liner • reset

or Classic search

votes

answers

200

views

answers

Split ordered fasta file by alphabetical group using awk

awk one-liner fasta written 10 weeks ago by Josh Herr ♦ 5.6k • updated 10 weeks ago by cpad0112 • 8.8k

Recent Votes

Recent Locations • All »

China, 1 minute ago
Korea, Republic Of, 6 minutes ago
United Kingdom, 8 minutes ago

Recent Awards • All »

Scholar to genomax ♦ 55k
Scholar to Kevin Blighe ♦ 28k
Teacher to Rob ♦ 2.6k
Teacher to Kevin Blighe ♦ 28k
Scholar to benformatics • 270
Popular Question to venu ♦ 5.6k

Recent Replies

C: Why the outcome of my EMBL conversion file is all 'gap'??? by Jerryliu • 10
it is like this: EMBLmyGFF3 maker.gff3 maker.fa \ --topology linear \ --m...
C: ClusterProfiler cannot map any gene by Guangchuang Yu • 1.9k
no it does work with gene symbol if you specify the `keyType = "SYMBOL"`
A: Use OrthoDB to retrieve the orthologs between human and bacteria by h.mon ♦ 19k
You are correct, OrthoDB restricts orthologs by clade: > There are 290 orthology levels, that...
C: Visualizing body organs in R by jared.andrews07 • 1.3k
I'm sure they will, the EBI Expression Atlas has anatograms for many species, even plants and suc...
C: Filtering in RNA-Seq to get Differentially Expressed lncRNA by conor93 • 0
Hi Charles, Thanks for getting back to me, > Ideally, having a merged list prior to quantifi...
C: What is the next step after download the ncbi sra data of pacbio RSII sequencing by Sparrow_kop • 190
Hi, harish, thanks! I will try it ! Also I had contacted the pacbio support , they said that the ...
A: Proper design for DESeq2 and other RNAseq general questions by h.mon ♦ 19k
From the description of your experiment, I think your design should be only `tissue`, why are you...
C: Visualizing body organs in R by lokraj2003 • 30
Thanks Garan for the link.
C: Visualizing body organs in R by lokraj2003 • 30
I saw some posts about gganatogram on Twitter. That package is really cool. I wish they could ad...
A: Performing differential expression study on isoforms by Charles Warden ♦ 5.2k
To be honest, I've typically parsed the counts from [Salmon][1] / [Sailfish][2] directly (when I ...
A: Difference between DESEq2 and ANCOM for estimating biomarkers (which is preferrr by Charles Warden ♦ 5.2k
I haven't personally tested [ANCOM][1], but I've tested [MetagenomeSeq][2]. I think it would be ...
A: Filtering in RNA-Seq to get Differentially Expressed lncRNA by Charles Warden ♦ 5.2k
If you use different annotation sources, separate quantification can avoid issues with ambiguous ...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1095 users visited in the last hour