Showing selected topics • reset
4
votes
2
answers
699
views
2
answers
Recent Votes
- How can I do GO enrichment analysis for bacteria genome? (biomaRt is not support bacteria anymore)
- A: How can I do GO enrichment analysis for bacteria genome? (biomaRt is not support
- C: creating chromosome plot
- A: GenomicRanges : How to reduce a GRanges by gene
- C: Differential expression issue
- C: from .BAM to .BAI using samtools
- A: GenomicRanges : How to reduce a GRanges by gene
Recent Locations •
All »
- Germany/Cologne, just now
- Germany, 1 minute ago
Recent Awards • All »
- Teacher to lakhujanivijay ♦ 4.8k
- Scholar to dsull • 910
- Appreciated to RamRS ♦ 25k
- Autobiographer to mattmelnicki • 0
- Teacher to jared.andrews07 ♦ 5.0k
- Scholar to Pierre Lindenbaum ♦ 126k
Recent Replies
-
C: creating chromosome plot by
Pierre Lindenbaum ♦ 126k
https://www.biostars.org/p/378/
-
C: Define boundaries using modeller. by
Joe ♦ 16k
Hi, in its present form this is not an answer, so please use the comment functionality to discuss...
-
C: Differential expression issue by
ATpoint ♦ 29k
Please show full code and how you set up the design matrix and contrasts.
-
C: Can I use DESeq2 for non-coding RNA? by
ATpoint ♦ 29k
Even if this is the case, once you remove the rRNA you should be able to perform normalization as...
-
C: Differential expression issue by
sabaghianamir70 • 10
I have 5 patients which all have 5 timepoints.(0 1 3 5 7) So i just need to take all samples whic...
-
A: Using Gencode transcript annotation in Kallisto / Sleuth pipeline by
brown.annaleigh • 0
Was googling around for the same question, found an answer on the Kallisto/Sleuth google users gr...
-
C: GenomicRanges : How to reduce a GRanges by gene by
zx8754 ♦ 9.0k
Mike's solution is just 2 lines, the rest is the same code with description. Also, microbenchmark...
-
C: Differential expression issue by
Kevin Blighe ♦ 55k
Thanks, but you are contradicting yourself with these statements: > I thought i can compare a...
-
C: GenomicRanges : How to reduce a GRanges by gene by
zx8754 ♦ 9.0k
Edited the answer, we just needed to add `chrom` into grouping. As the example data only had `chr...
-
C: Differential expression issue by
sabaghianamir70 • 10
Deseq and edgeR. i tried both. As i said : I thought i can compare all time 0 from 5 patients to...
-
C: Why does MEGAN LCA algorythm not assign a species to some 1-hit reads? by
gb • 1.5k
Does the 100% identity hit also has a 100% coverage? Also check the bitscore, one of the first st...
-
C: creating chromosome plot by
lakhujanivijay ♦ 4.8k
Try [karyoploter][1] [1]: https://bernatgel.github.io/karyoploter_tutorial//Tutorial/PlotMark...
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1327 users visited in the last hour