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- A: Is is possible to use blastn to search on remote database from terminal?
- A: Is is possible to use blastn to search on remote database from terminal?
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Recent Replies
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C: Cannot Generate Trimmomatic Output Files by
finswimmer ♦ 7.0k
Hello and welcome to biostars https://www.biostars.org/u/50500/ , Please use the formatting bar ...
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C: Picard MarkDuplicates shows error (removing pcr duplicates) by
finswimmer ♦ 7.0k
Caused by: java.io.FileNotFoundException: /tmp/home/CSPI.8946166571745516868.tmp/20922.tmp (T...
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A: Why should we remove the self-connected proteins when do gene prioritization wor by
Jean-Karim Heriche ♦ 17k
It depends on the context. Self interactions in a graph affect node degrees. This for example slo...
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C: Is is possible to use blastn to search on remote database from terminal? by
marongiu.luigi • 340
I actually got this output: mingled KR605506.1 100.000 434 0 0 1053 1486 1 434 0.0 802 N...
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C: Is is possible to use blastn to search on remote database from terminal? by
lieven.sterck • 3.1k
OK, yes, `blastn` is your weapon of choice then indeed. well, the DB is substantial yes, but you...
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C: Is is possible to use blastn to search on remote database from terminal? by
lieven.sterck • 3.1k
ok, freakish .. I was gonna comment on the fact you're using `blastn` againt the `nr` DB (=prote...
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C: Is is possible to use blastn to search on remote database from terminal? by
marongiu.luigi • 340
I am looking to blast DNA sequences to identify the organism of origin. I have thousands of entri...
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C: Is is possible to use blastn to search on remote database from terminal? by
lieven.sterck • 3.1k
`blastn` is for DNA to DNA comparisons. `nr` is a protein DB, so either you use `nt/nr` (=the nuc...
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A: Has anyone heard the term data warehousing in genomics before? by
Jean-Karim Heriche ♦ 17k
It's a common term and approach in dealing with biological data. Check for example this paper: [A...
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C: SNP call using bcftools by
ashaneev07 • 0
I've tried with the above command,but it shows; > Blockquote [warning] tag DP4 functional, bu...
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C: Picard MarkDuplicates shows error (removing pcr duplicates) by
Pierre Lindenbaum ♦ 114k
>300BP.sorted file is a sorted bam file. this is not the output of the command 'file'
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C: Picard MarkDuplicates shows error (removing pcr duplicates) by
ashaneev07 • 0
300BP.sorted file is a sorted bam file.
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