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Comment: Generate Index Files for Both Human and SARS-Cov2 Reads : Error : samtools view:

Answer: Is the promoter part of whole of gene in the UCSC database?

Running python script in Snakemake without input/output

A: Running python script in Snakemake without input/output

Comment: Trying to find file tutorial_8017 for GATK tutorial from the Broad Institute

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Popular Question to bis3 ▴ 10

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Comment: soapdenovo2 installation by Shakunthala Natarajan • 0

This worked! Thank you!

Comment: Generate Index Files for Both Human and SARS-Cov2 Reads : Error : samtools view: by universe_life • 0

Yes, I am doing index generation on my end and then using those files in the cloud environment at SevenB.

Comment: Error: err: option file. add space around the equal sign?. by 艳丽 • 0

Hi, have you got you problem resolved? I also came across the same error, could you please give some suggestions?

Comment: Why isn't GWAS used in oncology? by LChart ▴ 450

Hit #3 from a [google scholar search][1] is this recent paper: [Whole-genome sequencing of 508 patients identifies key molecular features a…

Comment: Trying to find file tutorial_8017 for GATK tutorial from the Broad Institute by appropiate ▴ 30

Oh yes, I see the delete button when editing, thanks a lot @Ram!!

Comment: How to replace # with character in fasta file after header and space by Neel ▴ 20

Thank you so much for your time, Actually i want to add strain name also so that i can track later which gene from which strain.

Comment: Ensembl, Fetch "Phenotypes" information by hmende.z • 0

Hi Ben, Thank you so much for your feedback, I am going to try your suggestions.

Comment: Understanding TCGA Pancancer data from cBioPortal by dsull ★ 3.2k

I personally prefer getting pan-cancer TCGA data from https://xenabrowser.net/datapages/?dataset=TCGA-GTEx-TARGET-gene-exp-counts.deseq2-no…

Answer: Understanding TCGA Pancancer data from cBioPortal by Ernest Bonat ▴ 10

hello james, i got the same issue when i looked at this dataset before. here is the dataset i used to apply classification machine learnin…

Comment: Why isn't GWAS used in oncology? by sbstevenlee ▴ 470

+1 for mentioning LD for microarray-based studies. Quick follow-up question: In the context of somatic mutation-based GWASs (e.g. using WG…

Comment: Reference 1000G data by Alexandra ▴ 10

Thank you!

Answer: Reference 1000G data by Kevin Blighe 82k

Hi, The phased variant calls for the 1000 Genomes Phase III project in VCF is located here: http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/da…

Answer: Why isn't GWAS used in oncology? by LChart ▴ 450

Genome-wide association studies are used all the time in oncology. Using WGS to look for recurrent somatic mutations (at a single-variant o…

Answer: High proportion of non-biallelic SNPs in dbSNP 155 vs 144 by chrchang523 9.5k

This is… exactly what you’d expect as more and more people get sequenced?

Comment: I don't find trimmomatic.jar file by Hayler Edu • 0

Helloooo thank you for the help to resolve the error

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