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Pysam get query sequence range without loop
python pysam written 6 hours ago by yryan • 0
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Fasta to axt - KaKs Calculator
perl R kaks python bash written 4.8 years ago by tlorin • 260 • updated 3 days ago by Biostar ♦♦ 20
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how to compare and find similarity between two gene data sets?
R python written 3 days ago by husainbioinfos • 0 • updated 3 days ago by Carambakaracho • 2.0k
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5 follow
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how to write two fastq files into one
python written 5 days ago by susangao007 • 0 • updated 5 days ago by Pierre Lindenbaum ♦ 126k
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Snakemake: Force execution of rules in a specific order - ignoring wildcards
python snakemake rule execution written 6 days ago by camerond • 150 • updated 6 days ago by Eric Lim • 1.6k
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No rule keywords allowed after run in snakefile
run python snakemake written 6 days ago by Assa Yeroslaviz • 1.3k • updated 6 days ago by Thibault D. • 690
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Job: Machine/Deep Learning Research Scientist at UNC Charlotte, NC, USA
statistics python machine learning job R rna-seq written 3 months ago by bigmawen • 340
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5
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15 follow
5
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Forum: Interesting/useful/beautiful bio sequence viz tools
viz python forum visualisation written 23 months ago by Joe ♦ 16k • updated 8 days ago by statologycontact • 0
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AttributeError: 'list' object has no attribute 'SeqRecord' - Slice multiple sequences with Biopython>SeqIO from fasta file
python sequence biopython seqio written 10 days ago by coyot001 • 10
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How to get Taxonomy and Taxon ID for an Accession number using R/Python?
R taxonomy accession numer python written 13 days ago by Fardokht • 20 • updated 10 days ago by Chirag Parsania • 1.7k
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6 follow
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Can Pymsxml Run Under Activepython V2.5.5?
python conversion written 9.3 years ago by Neilfws ♦ 48k • updated 13 days ago by daviddaison0077 • 0
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Bowtie2 Warnings after make command and errors after trying to use bowtie2-build
bowtie2 alignment python written 13 days ago by guto03 • 0
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Is there any tool available to generate ultrametric tree from a rooted phylogenetic tree?
phylogeny perl python unix R written 15 days ago by Dineshkumar K • 30 • updated 14 days ago by Brice Sarver • 3.5k
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Reporting the table used by seaborn clustermap
python seaborn clustermap written 18 days ago by yoyosalvo • 0
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Fetching Genbank Assembly IDs with protein
python biopython entrez written 27 days ago by anabaena • 0 • updated 18 days ago by vkkodali • 1.7k
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Making pattern of GT:AD:DP:PL column values to be replaced by o and 1.
vcf python grep machinelearning linux written 22 days ago by S AR • 50 • updated 18 days ago by Kevin Blighe ♦ 54k
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Create SNP data from scratch with python
python from scratch snp data written 20 days ago by Oliver • 0 • updated 20 days ago by ATpoint ♦ 29k
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142
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Moving data from Seurat to ScanPy
single-cell R seurat scanpy python written 23 days ago by rmf • 900 • updated 23 days ago by khorms • 50
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1
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117
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Append only sequence itself to list, no metadata
fasta python biopython written 10 weeks ago by sam.vanbergen8 • 0 • updated 25 days ago by Biostar ♦♦ 20
4
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How to parse sequences from a gbk file, based on the coordinates specified in given file?
perl python bash gbk written 27 days ago by Dineshkumar K • 30 • updated 27 days ago by vkkodali • 1.7k
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How to define a path to the HTSeq python packages
cap-mirseq rna-seq python written 27 days ago by jomagrax • 20
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8 follow
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I have 2 identical jupyter notebooks and I get BiomartException when I run one but not the other.
python biomart written 4 weeks ago by Maria K • 50 • updated 28 days ago by Biostar ♦♦ 20
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9 follow
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Folding RNA on python
python rna folding written 10 months ago by gprezza • 30 • updated 4 weeks ago by jtimmons • 30
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Job: Open positions at the Center for Molecular Oncology, MSKCC, New York
cancer python job sequencing R genetics written 2.4 years ago by Cyriac Kandoth ♦ 5.5k
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Searching for genes in assembles genome database
python metagenomics written 5 weeks ago by anabaena • 0 • updated 4 weeks ago by onestop_data • 160
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1
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Searching through assemblies for specific gene/genecluster
gene python metagenomics written 4 weeks ago by anabaena • 0 • updated 4 weeks ago by Michael Dondrup ♦ 47k
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145
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How to read vcf file in python?
vcf python reader written 5 weeks ago by ja4123 • 0 • updated 4 weeks ago by onestop_data • 160
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Query about PID in .ptt file
python pid .ptt written 4 weeks ago by umehabiba617 • 0 • updated 4 weeks ago by genomax ♦ 78k
3
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1
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103
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1
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blast with python don't run
python blast written 5 weeks ago by flogin • 150 • updated 5 weeks ago by gb • 1.5k
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1
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91
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1
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error to import NcbimakeblastdbCommandline
python biopython blast written 5 weeks ago by flogin • 150
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