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check if my gene name exists in Kegg pathway
python kegg bioservices written 1 day ago by EFN • 0 • updated 1 day ago by Vijay Lakhujani ♦ 2.4k
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1
answer
99
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1
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Error with snakemake
python pipeline snakemake salmon written 2 days ago by beginner • 20 • updated 2 days ago by WouterDeCoster ♦ 29k
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1
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71
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1
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Trouble locating a known motif on (-) strand: any hints for a beginner?
genome pssm python motif search written 2 days ago by Christian • 0 • updated 2 days ago by Bastien Hervé • 1.3k
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1
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53
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1
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pysam: Use read ID to access location
python pysam bam file written 3 days ago by bd2810 • 0
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76
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Simple visual output of Pairwise Sequence alignment
pairwise python alignment visualisation sequence written 4 days ago by chelseakarasawyer • 0 • updated 4 days ago by genomax ♦ 49k
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159
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Job: Senior Bioinformatician at Partners Personalized Medicine, Cambridge MA, USA
python machinelearning R job written 8 days ago by hns • 130
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90
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Bedtools intersect -u or -wa causing issues
bedtools python pybedtools igv written 10 days ago by alex.v.nesta • 0
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1
answer
81
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1
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Filtering gene trees generated by RAXML
python raxml R written 10 days ago by apulunuj • 0 • updated 10 days ago by h.mon ♦ 15k
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1
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52
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1
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Counting Gene Clusters from Antismash Output
python data mining antismash seqio written 10 days ago by b.d237 • 0
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2
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112
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index of the residue matched using pairwise2 in biopython
pairwise python sequence biopython written 13 days ago by akdbharadwajiitkgp • 0 • updated 10 days ago by Russ • 300
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2
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93
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2
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Faster alternative of NCBI eutils
ncbi python api written 10 days ago by arup • 340 • updated 10 days ago by genomax ♦ 49k
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131
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retrieving pathways belong to my gene names
python kegg bioservices written 12 days ago by EFN • 0
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1
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103
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1
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Why are some codons containing uncertainties wrongly translated in BioPython?
sequence python translation biopython written 13 days ago by Palming • 0
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157
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14 follow
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Parsing Blast output on linux/unix
python parse blast output linux written 13 days ago by chagross • 40 • updated 13 days ago by shira.zaltsman • 0
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Tool: Pyteomics - An Open-Source Python Framework For Mass Spectrometry (Ms) Based Proteomics
proteomics python sequence tool mass-spec written 5.3 years ago by lev.levitsky • 90
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2
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167
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2
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Protein domain sequence extraction with Python
gene python sequence written 16 days ago by julien-le.roy • 0 • updated 15 days ago by cpad0112 ♦ 6.3k
2
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2
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147
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2
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Help finding all allele combinations using Python
python snp combinations hirisplex written 17 days ago by amandaskinner94 • 10 • updated 16 days ago by finswimmer ♦ 2.7k
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1
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126
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1
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Generate connected nodes as list of tuples by expanding newick tree
phylogeny python trees written 17 days ago by jacob_peters • 0
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1
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1
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Automatic layout of SBML file in python
python sbml written 3.7 years ago by Fredrik • 30 • updated 17 days ago by Moritz E. Beber • 0
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1
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117
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1
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Create Seq Record(s) Object from my SORTED list!
python biopython seq record written 18 days ago by incensefrenzie2006 • 0
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10
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11k
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17 follow
10
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Perl Or Python For Comparative Genomics?
python bioperl biopython comparative written 7.7 years ago by Dave Lunt • 2.0k • updated 19 days ago by Vijay Lakhujani ♦ 2.4k
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223
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How to count the total aligned bases in BAM?
python bam pysam pybedtools written 20 days ago by vw • 10
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1
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140
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1
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Get the GO terms associated to all genes contained in a list with Python
python go terms written 23 days ago by jopealfe • 0 • updated 23 days ago by EagleEye • 5.3k
91
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15
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27k
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24 follow
15
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What Is The Quickest Algorithm For Range Overlap?
python database next-gen alignment sequencing written 7.8 years ago by User 1586 • 260 • updated 24 days ago by endrebak • 640
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2
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6 follow
2
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Handling Ranged Data In Python
python biopython R written 6.3 years ago by Abhi • 1.5k • updated 24 days ago by endrebak • 640
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118
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Tool: (pre-alpha) pyranges: performant, pythonic GenomicRanges
python genomicranges tool written 26 days ago by endrebak • 640
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122
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5 follow
1
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output differents value between samtools depth and pysam
python pysam written 27 days ago by electronsource75 • 10 • updated 27 days ago by Devon Ryan ♦ 80k
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1
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131
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1
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QIIME filter_fasta.py not removing chimeric sequences
python 16s rrna qiime chimera written 4 weeks ago by samanthabird • 0 • updated 29 days ago by toralmanvar • 330
1
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1
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162
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1
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Parsing df with pandas and some conditions
python pandas written 4 weeks ago by benjamin • 0 • updated 4 weeks ago by cpad0112 ♦ 6.3k
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133
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0
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OBITools installation error (mac OS X)
software error python written 4 weeks ago by mariahaguiar001 • 0
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