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<prev • 38 results • page 1 of 2 • next >
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Conversion read counts to TPM for microRNAs
tpm mirna written 7 days ago by lessismore • 470 • updated 7 days ago by Buffo • 1.1k
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1
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119
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1
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Calculating TPM Values
tpm rna-seq sequencing written 16 days ago by biocool2018 • 10 • updated 15 days ago by Tao • 200
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1
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170
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1
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Converting expected counts to TPM values
rnaseq expected-counts reads mcf10a tpm written 7 weeks ago by bhchiang • 0 • updated 7 weeks ago by Kevin Blighe ♦ 16k
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165
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Choice of Gene Length in TPM Calculations
tpm rna-seq written 8 weeks ago by dec986 • 90
2
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1
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310
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1
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Calculate TPM from cuffnorm count data
fpkm cufflinks tpm cuffnorm rna-seq written 3 months ago by galozs • 20 • updated 3 months ago by Macspider • 2.3k
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486
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Cutoff for TPM value
tpm transcriptome written 6 months ago by Picasa • 340 • updated 3 months ago by Macspider • 2.3k
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384
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1
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Have Salmon output tabular files from Galaxy; need to import into R for DESeq2
salmon deseq2 tpm rna-seq written 4 months ago by Dennis • 0 • updated 4 months ago by WouterDeCoster ♦ 27k
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1
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486
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1
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Minimal TPM threshold for qPCR measure of gene expression
tximport tpm qpcr rna-seq kallisto written 5 months ago by tlorin • 230
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Filter transcripts based on expression value: TPM vs TMM ?
transcriptome tpm tmm written 6 months ago by Picasa • 340
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1
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685
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1
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Data for drawing Heatmaps (RNA-seq)
fpkm heatmap tpm rna-seq tmm written 6 months ago by sd.gamboa.t • 0 • updated 6 months ago by Corentin • 130
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1
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487
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1
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How to calculate TPM of transcripts with isoforms
gene tpm transcript rna-seq written 6 months ago by marcosp.belem • 0 • updated 6 months ago by Rob ♦ 2.3k
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996
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Filtering out low expressed genes in RNA-Seq data
preprocessing tpm rna-seq written 6 months ago by lessismore • 470 • updated 6 months ago by i.sudbery • 1.9k
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7.3k
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5 follow
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Converting TCGA expression data from FPKM to TPM
fpkm tcga tpm rna-seq expression written 2.5 years ago by Alex Reynolds ♦ 23k • updated 7 months ago by fabio-verdao • 0
3
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402
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Are TPM values generated by different programs comparable?
stringtie tpm kallisto written 7 months ago by amy.bashir • 70 • updated 7 months ago by h.mon ♦ 13k
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7 follow
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Is there a way to calculate p-values, FDR or t test starting from logFC data?
R tpm written 8 months ago by Spacebio • 180 • updated 8 months ago by theobroma22 • 1.1k
2
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1
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409
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1
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Dataset normalised to TPM (GSE85066)
R tpm rna-seq rstudio deg written 8 months ago by Vania • 10 • updated 8 months ago by h.mon ♦ 13k
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2
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861
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8 follow
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TPM to logFC and pvalues
R tpm rna-seq dataanalysis written 8 months ago by Spacebio • 180
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489
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1
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TPM (trancripts per million) RNA-Seq analysis
R tpm rna-seq rstudio written 9 months ago by Spacebio • 180 • updated 9 months ago by grant.hovhannisyan • 730
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1
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486
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Kallisto : Compare TPM between samples from different illumina sequencers (HiSeq2000 and NextSeq500)
tpm kallisto written 9 months ago by Nicolas Rosewick • 6.2k • updated 9 months ago by andrew.j.skelton73 ♦ 4.5k
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404
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TPM for low numbers of counts
sc rna seq tpm rna-seq written 10 months ago by ly.leifels • 0 • updated 10 months ago by Istvan Albert ♦♦ 76k
3
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1
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351
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1
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Subset of transcripts - Do I need to re-scale the TPM values?
tpm kallisto rna-seq written 10 months ago by user230613 • 260
4
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1
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737
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1
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Converting TPM to FPKM
fpkm tpm rna-seq written 11 months ago by alexahes • 10 • updated 11 months ago by karl.stamm ♦ 3.2k
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1
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769
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Is log-transformation needed to calculate Euclidean distance metric from FPKM/TPM?
distance metric tpm fpkm clustering rna-seq written 13 months ago by MMa • 230 • updated 13 months ago by Petr Ponomarenko • 2.5k
2
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755
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Common Cutoff in TPM unit to filter out gene considered as low expressed.
tpm salmon rna-seq written 14 months ago by ZheFrench • 120 • updated 14 months ago by Devon Ryan ♦ 78k
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2.7k
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How do you normalize Transcript per Million TPM to compare between samples ?
tpm quantification salmon star rna-seq written 15 months ago by ZheFrench • 120
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3
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1.5k
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3
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Convert read counts to RPKM or TPM values: Numbers don't look right?
geo rpkm gene expression tpm written 15 months ago by Tom • 10 • updated 15 months ago by mforde84 • 1.1k
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971
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rna-seq expression analysis using normalized TPM
analysis gene expression tpm normalized rna-seq written 16 months ago by bioinformatics.cancer • 160
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963
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Tools for calculating TPM from BAM files
gene expression tpm bam written 16 months ago by 309772486 • 10 • updated 16 months ago by Ron • 710
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TMM.normalized.FPKM vs .TMM.EXPR.matrix for populating SQL
trinity fpkm tpm sql edger written 18 months ago by ando.kelli • 30
21
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2
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27k
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14 follow
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Using transcripts per million (TPM)
deseq2 tpm rna-seq written 3.1 years ago by Tom Harrop • 140 • updated 19 months ago by Biostar ♦♦ 20
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