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<prev • 94 results • page 1 of 4 • next >
2
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1
answer
144
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1
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Transcripts per kilobase million
tpm written 8 weeks ago by mrashad • 50 • updated 8 weeks ago by rpolicastro ♦ 3.9k
10
votes
1
answer
275
views
1
answer
Can I use Negative Binomial regression to model TPM counts?
tpm negative binomial rna-seq written 3 months ago by guillepalou4 • 10 • updated 3 months ago by dariober ♦ 11k
6
votes
0
answers
278
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0
answers
Is it good to merge transcripts tpm to gene which is of different gene type?
tpm kallisto rna-seq written 4 months ago by newbie • 90 • updated 4 months ago by wensulin93 • 0
0
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0
answers
251
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0
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Comparison of ratio of expression between two genes across samples
normalization tpm relative abundance rna-seq written 4 months ago by guillepalou4 • 10
0
votes
0
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258
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0
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Why counts to tpm gives different values compared to tpm from kallisto?
featurecounts tpm kallisto rna-seq rawcounts written 4 months ago by newbie • 90
0
votes
0
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231
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0
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Correcting RNA-seq matrix by removing principal components gives negative values in the matrix
principal components tpm rna-seq pca written 4 months ago by guillepalou4 • 10
5
votes
1
answer
327
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5 follow
1
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How to get transcripts lengths from RNAseq data to calculate TPM
tpm bioconductor genomicfeatures rna-seq written 4 months ago by MatStat • 140 • updated 4 months ago by ATpoint ♦ 46k
1
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0
answers
197
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0
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Within-sample gene expression ranks
rpkm ccle rsem tpm written 4 months ago by sey • 10
1
vote
1
answer
255
views
1
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RPKM value and TPM value
normal rpkm tumor tpm written 4 months ago by anjuraas • 10 • updated 4 months ago by Bastien Hervé ♦ 4.9k
3
votes
1
answer
425
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1
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RPKM and TPM when operating with small group of genes: is there a bias?
rnaseq rpkm statistics tpm sequencing written 5 months ago by Macspider • 3.3k
3
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1
answer
246
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1
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Is "TPM" suitable for caculating DEG from different transcriptome researches but one specie
tpm rna-seq deg written 5 months ago by wensulin93 • 0 • updated 5 months ago by ATpoint ♦ 46k
1
vote
1
answer
447
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1
answer
How to compare gene TPM values of two different conditions obtained from different experiments (for overview)
normalization tpm rna-seq written 5 months ago by Thind amarinder • 120 • updated 5 months ago by ATpoint ♦ 46k
10
votes
3
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776
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5 follow
3
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gene length for calculating TPM values
genome tpm rna-seq sequencing written 6 months ago by DNA2RNA • 20
2
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0
answers
296
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0
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Is it possible to identify different expressed genes by using TPM?
tpm deseq rna-seq written 7 months ago by taylor • 0 • updated 7 months ago by Shalu Jhanwar • 490
0
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0
answers
144
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0
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Question about Quantifying Exon Expression with TPM
gene expression tpm written 8 months ago by scholastic_grade_descent • 0
0
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0
answers
347
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0
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Working with Mean TPM Values for Heatmaps
heatmap tpm rna-seq dice written 8 months ago by nk130 • 0
5
votes
2
answers
283
views
2
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Meaning of columns in TSV Kallisto mapped file
tpm kallisto differential expression written 8 months ago by Antonio R. Franco • 4.6k
1
vote
2
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555
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5 follow
2
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retrieve TPM matrix from raw counts matrix or DESeq2 object dds
deseq2 tpm raw counts tcga brca written 9 months ago by StartR • 20 • updated 9 months ago by igor ♦ 12k
0
votes
0
answers
279
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0
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Batch effect correction for RNAseq visualization
R tpm deseq rna-seq batch written 9 months ago by fbleao • 0
1
vote
0
answers
320
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0
answers
TPM-like normalization of time series RNAseq data to minimize dispersion of counts within replicates
time-series normalization tpm rna-seq written 10 months ago by AnonymousEngineer • 0
1
vote
1
answer
3.1k
views
5 follow
1
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Kallisto TPM values
tpm kallisto written 2.8 years ago by oliveira.bhn • 10 • updated 10 months ago by CrisMar • 80
1
vote
1
answer
433
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1
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Should I normalize TPM data?
gene tpm written 11 months ago by jt • 0
3
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1
answer
420
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1
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which normalization method for my RNA-seq data set?
deseq2 tpm rna-seq edger tmm written 11 months ago by nyoegut • 10 • updated 11 months ago by GenoMax ♦ 96k
1
vote
2
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362
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2
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Append TPM value to sequence header in FASTA file
fasta tpm rna-seq transcripts linux written 12 months ago by molly77 • 10 • updated 12 months ago by JC ♦ 12k
0
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1
answer
279
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1
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comparative gene quantification, problem with COGs and hypothetical proteins.
gene tpm cog abundance written 12 months ago by Hansen_869 • 20
2
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1
answer
302
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1
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TPM Cutoff For Venn Diagrams
cutoff tpm venn rna-seq written 13 months ago by jehammo • 0 • updated 13 months ago by jared.andrews07 ♦ 8.6k
1
vote
0
answers
608
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0
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Is there a way where we can convert TPM to raw read count?
normalization tpm read count rna-seq written 13 months ago by Researcher • 70
1
vote
1
answer
313
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1
answer
Accounting for differences in FASTQ-file size, when comparing metagenomic gene abundance between samples
gene reads metagenomics tpm written 13 months ago by Hansen_869 • 20 • updated 13 months ago by tshtatland • 70
3
votes
1
answer
327
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1
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which Length of gene is valid for using in Transcript Per million (TPM)?
normalization tpm rna-seq written 14 months ago by modarzi • 140 • updated 14 months ago by Kevin Blighe ♦ 71k
0
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0
answers
457
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0
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why the TPM value is not same?
R tpm normalizing edger rpkm written 14 months ago by star • 270 • updated 14 months ago by Ram ♦ 32k
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