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<prev • 42 results • page 1 of 2 • next >
0
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2
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177
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RPKM to TPM conversion?
rpkm tpm conversion rna-seq rna written 8 weeks ago by brieannsobieski • 0
7
votes
1
answer
408
views
1
answer
TMM or TPM normalized counts for visualization?
normalization tpm edger tmm written 11 weeks ago by sam.vanc70 • 10 • updated 11 weeks ago by Devon Ryan ♦ 82k
1
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0
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232
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0
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Kallisto TPM values
tpm kallisto written 11 weeks ago by oliveira.bhn • 10
5
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2
answers
229
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2
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How to analyse RNA-Seq data with JUST geneID and TPM values
geneid tpm rna-seq dge written 3 months ago by andorjkiss • 10 • updated 3 months ago by igor ♦ 6.5k
1
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1
answer
195
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1
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Conversion read counts to TPM for microRNAs
tpm mirna written 4 months ago by lessismore • 490 • updated 4 months ago by Buffo • 1.1k
3
votes
1
answer
530
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1
answer
Calculating TPM Values
tpm rna-seq sequencing written 4 months ago by biocool2018 • 10 • updated 4 months ago by Tao • 230
0
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1
answer
323
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1
answer
Converting expected counts to TPM values
rnaseq expected-counts reads mcf10a tpm written 5 months ago by bhchiang • 0 • updated 5 months ago by Kevin Blighe ♦ 25k
0
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0
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261
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0
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Choice of Gene Length in TPM Calculations
tpm rna-seq written 5 months ago by dec986 • 110
2
votes
1
answer
609
views
1
answer
Calculate TPM from cuffnorm count data
fpkm cufflinks tpm cuffnorm rna-seq written 7 months ago by galozs • 20 • updated 7 months ago by Macspider • 2.5k
1
vote
1
answer
709
views
1
answer
Cutoff for TPM value
tpm transcriptome written 10 months ago by Picasa • 350 • updated 8 months ago by Macspider • 2.5k
0
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1
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529
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1
answer
Have Salmon output tabular files from Galaxy; need to import into R for DESeq2
salmon deseq2 tpm rna-seq written 8 months ago by Dennis • 0 • updated 8 months ago by WouterDeCoster ♦ 31k
2
votes
1
answer
739
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1
answer
Minimal TPM threshold for qPCR measure of gene expression
tximport tpm qpcr rna-seq kallisto written 9 months ago by tlorin • 240
0
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0
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691
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0
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Filter transcripts based on expression value: TPM vs TMM ?
transcriptome tpm tmm written 10 months ago by Picasa • 350
0
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1
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1.4k
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1
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Data for drawing Heatmaps (RNA-seq)
fpkm heatmap tpm rna-seq tmm written 10 months ago by sd.gamboa.t • 0 • updated 10 months ago by Corentin • 150
2
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1
answer
791
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1
answer
How to calculate TPM of transcripts with isoforms
gene tpm transcript rna-seq written 10 months ago by marcosp.belem • 0 • updated 10 months ago by Rob ♦ 2.5k
1
vote
1
answer
1.8k
views
1
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Filtering out low expressed genes in RNA-Seq data
preprocessing tpm rna-seq written 10 months ago by lessismore • 490 • updated 10 months ago by i.sudbery • 2.4k
11
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2
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8.3k
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5 follow
2
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Converting TCGA expression data from FPKM to TPM
fpkm tcga tpm rna-seq expression written 2.9 years ago by Alex Reynolds ♦ 25k • updated 11 months ago by fabio-verdao • 0
3
votes
1
answer
543
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1
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Are TPM values generated by different programs comparable?
stringtie tpm kallisto written 11 months ago by amy.bashir • 80 • updated 11 months ago by h.mon ♦ 18k
5
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3
answers
749
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7 follow
3
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Is there a way to calculate p-values, FDR or t test starting from logFC data?
R tpm written 12 months ago by Spacebio • 180 • updated 12 months ago by theobroma22 • 1.1k
2
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1
answer
504
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1
answer
Dataset normalised to TPM (GSE85066)
R tpm rna-seq rstudio deg written 12 months ago by Vania • 10 • updated 12 months ago by h.mon ♦ 18k
9
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2
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1.4k
views
8 follow
2
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TPM to logFC and pvalues
R tpm rna-seq dataanalysis written 12 months ago by Spacebio • 180
1
vote
1
answer
672
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1
answer
TPM (trancripts per million) RNA-Seq analysis
R tpm rna-seq rstudio written 13 months ago by Spacebio • 180 • updated 13 months ago by grant.hovhannisyan • 990
4
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1
answer
667
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1
answer
Kallisto : Compare TPM between samples from different illumina sequencers (HiSeq2000 and NextSeq500)
tpm kallisto written 13 months ago by Nicolas Rosewick ♦ 6.5k • updated 13 months ago by andrew.j.skelton73 ♦ 5.2k
1
vote
1
answer
572
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1
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TPM for low numbers of counts
sc rna seq tpm rna-seq written 14 months ago by ly.leifels • 0 • updated 14 months ago by Istvan Albert ♦♦ 77k
3
votes
1
answer
481
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1
answer
Subset of transcripts - Do I need to re-scale the TPM values?
tpm kallisto rna-seq written 14 months ago by user230613 • 260
4
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1
answer
928
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1
answer
Converting TPM to FPKM
fpkm tpm rna-seq written 15 months ago by alexahes • 10 • updated 15 months ago by karl.stamm ♦ 3.3k
3
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1
answer
996
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1
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Is log-transformation needed to calculate Euclidean distance metric from FPKM/TPM?
distance metric tpm fpkm clustering rna-seq written 17 months ago by MMa • 240 • updated 17 months ago by Petr Ponomarenko • 2.5k
2
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1
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978
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1
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Common Cutoff in TPM unit to filter out gene considered as low expressed.
tpm salmon rna-seq written 18 months ago by ZheFrench • 140 • updated 18 months ago by Devon Ryan ♦ 82k
1
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0
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3.5k
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0
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How do you normalize Transcript per Million TPM to compare between samples ?
tpm quantification salmon star rna-seq written 19 months ago by ZheFrench • 140
4
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3
answers
2.2k
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3
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Convert read counts to RPKM or TPM values: Numbers don't look right?
geo rpkm gene expression tpm written 19 months ago by Tom • 20 • updated 19 months ago by mforde84 • 1.2k
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