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<prev • 49 results • page 1 of 2 • next >
7
votes
3
answers
1.2k
views
5 follow
3
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Converting TPM to FPKM
fpkm tpm rna-seq written 21 months ago by alexahes • 10 • updated 16 days ago by Charles Warden ♦ 6.1k
0
votes
0
answers
50
views
0
answers
Pseudotime on scRNAseq TPMs?
tpm pseudotime scrnaseq written 17 days ago by m.fletcher • 20
1
vote
0
answers
507
views
0
answers
TCGA expression data (TPM)
tcgabiolinks tcga tpm expression written 5 months ago by Folder40g • 110 • updated 23 days ago by Israel Barrantes • 730
0
votes
0
answers
165
views
0
answers
Comparing gene expression of specific genes between samples in DESeq2 / R
deseq2 tpm rna-seq written 8 weeks ago by masicioglu • 0
0
votes
0
answers
176
views
0
answers
Transforming RNA-seq data- (tpms) - what is the best practice for dealing with zeros for the purpose of deconvolution?
deconvolution cibersort tpm rna-seq written 8 weeks ago by nancy • 70
2
votes
1
answer
218
views
1
answer
Featurecounts normalize by gene length
featurecount deseq2 tpm written 10 weeks ago by David • 140
6
votes
3
answers
190
views
3
answers
DE Analysis starting from TPM matrix? Also, no replicates.
tpm rna-seq written 12 weeks ago by basch • 0 • updated 12 weeks ago by Michael Dondrup ♦ 45k
1
vote
2
answers
1.3k
views
2
answers
TMM.normalized.FPKM vs .TMM.EXPR.matrix for populating SQL
trinity fpkm tpm sql edger written 2.3 years ago by ando.kelli • 40 • updated 4 months ago by egtabilin • 0
9
votes
1
answer
356
views
6 follow
1
answer
Is it possible to make a PCA plot for samples using TPM exprssion values in R?
pca tpm rna-seq written 5 months ago by rimgubaev • 70 • updated 5 months ago by andrew.j.skelton73 ♦ 5.5k
2
votes
2
answers
976
views
2
answers
RPKM to TPM conversion?
rpkm tpm conversion rna-seq rna written 7 months ago by brieannsobieski • 0
8
votes
1
answer
1.5k
views
6 follow
1
answer
TMM or TPM normalized counts for visualization?
normalization tpm edger tmm written 8 months ago by sam.vanc70 • 20 • updated 8 months ago by Devon Ryan ♦ 88k
1
vote
0
answers
688
views
0
answers
Kallisto TPM values
tpm kallisto written 8 months ago by oliveira.bhn • 10
5
votes
2
answers
450
views
2
answers
How to analyse RNA-Seq data with JUST geneID and TPM values
geneid tpm rna-seq dge written 9 months ago by andorjkiss • 10 • updated 9 months ago by igor ♦ 7.3k
1
vote
1
answer
486
views
1
answer
Conversion read counts to TPM for microRNAs
tpm mirna written 10 months ago by lessismore • 570 • updated 10 months ago by Buffo • 1.2k
4
votes
1
answer
1.6k
views
5 follow
1
answer
Calculating TPM Values
tpm rna-seq sequencing written 10 months ago by biocool2018 • 20 • updated 10 months ago by Tao • 270
0
votes
1
answer
558
views
1
answer
Converting expected counts to TPM values
rnaseq expected-counts reads mcf10a tpm written 11 months ago by bhchiang • 0 • updated 11 months ago by Kevin Blighe ♦ 37k
0
votes
0
answers
424
views
0
answers
Choice of Gene Length in TPM Calculations
tpm rna-seq written 11 months ago by dec986 • 130
2
votes
1
answer
1.0k
views
1
answer
Calculate TPM from cuffnorm count data
fpkm cufflinks tpm cuffnorm rna-seq written 13 months ago by galozs • 20 • updated 13 months ago by Macspider • 2.7k
1
vote
1
answer
1.2k
views
1
answer
Cutoff for TPM value
tpm transcriptome written 16 months ago by Picasa • 390 • updated 14 months ago by Macspider • 2.7k
0
votes
1
answer
766
views
1
answer
Have Salmon output tabular files from Galaxy; need to import into R for DESeq2
salmon deseq2 tpm rna-seq written 14 months ago by Dennis • 0 • updated 14 months ago by WouterDeCoster ♦ 36k
2
votes
1
answer
1.2k
views
1
answer
Minimal TPM threshold for qPCR measure of gene expression
tximport tpm qpcr rna-seq kallisto written 15 months ago by tlorin • 250
0
votes
0
answers
1.0k
views
0
answers
Filter transcripts based on expression value: TPM vs TMM ?
transcriptome tpm tmm written 16 months ago by Picasa • 390
3
votes
1
answer
2.7k
views
5 follow
1
answer
Data for drawing Heatmaps (RNA-seq)
fpkm heatmap tpm rna-seq tmm written 16 months ago by sd.gamboa.t • 30 • updated 16 months ago by Corentin • 230
2
votes
1
answer
1.1k
views
1
answer
How to calculate TPM of transcripts with isoforms
gene tpm transcript rna-seq written 16 months ago by marcosp.belem • 0 • updated 16 months ago by Rob ♦ 3.1k
3
votes
1
answer
3.2k
views
1
answer
Filtering out low expressed genes in RNA-Seq data
preprocessing tpm rna-seq written 16 months ago by lessismore • 570 • updated 16 months ago by i.sudbery ♦ 3.7k
11
votes
2
answers
9.9k
views
5 follow
2
answers
Converting TCGA expression data from FPKM to TPM
fpkm tcga tpm rna-seq expression written 3.4 years ago by Alex Reynolds ♦ 27k • updated 17 months ago by fabio-verdao • 0
3
votes
1
answer
762
views
1
answer
Are TPM values generated by different programs comparable?
stringtie tpm kallisto written 17 months ago by amy.bashir • 80 • updated 17 months ago by h.mon ♦ 23k
5
votes
3
answers
1.1k
views
7 follow
3
answers
Is there a way to calculate p-values, FDR or t test starting from logFC data?
R tpm written 18 months ago by Spacebio • 180 • updated 18 months ago by theobroma22 • 1.1k
2
votes
1
answer
657
views
1
answer
Dataset normalised to TPM (GSE85066)
R tpm rna-seq rstudio deg written 18 months ago by Vania • 10 • updated 18 months ago by h.mon ♦ 23k
9
votes
2
answers
2.2k
views
8 follow
2
answers
TPM to logFC and pvalues
R tpm rna-seq dataanalysis written 18 months ago by Spacebio • 180
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