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2
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192
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5 follow
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How to normalized TPM with TMM method?
tpm rna-seq edger tmm written 5 weeks ago by xiaoguang • 10 • updated 1 day ago by Gordon Smyth • 950
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0
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70
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TPM on SingleCell RNASeq
tpm rna-seq scrnaseq written 2 days ago by difraiadomenico • 0
8
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1
answer
189
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1
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Metric to use for RNAseq expression matrix
expression tpm counts rna-seq batch effect written 11 days ago by RamRS ♦ 23k • updated 11 days ago by i.sudbery ♦ 5.1k
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3
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173
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5 follow
3
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Can I compare TPM values for a transcript across different transcriptome assemblies?
gene expression tpm rna-seq transcript written 25 days ago by molly77 • 10
0
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1
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84
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1
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HISAT2/stringtie: intron impact on expression
tpm stringtie mrna expression rna-seq hisat2 written 24 days ago by Adrian Pelin • 2.3k • updated 24 days ago by kristoffer.vittingseerup • 2.2k
2
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1
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146
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1
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How to convert Xena Browser normalized RSEM values to TPM values?
xenabrowser tpm rna-seq written 11 weeks ago by carlee.bettler • 10 • updated 11 weeks ago by Charles Warden ♦ 7.2k
0
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0
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337
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0
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Calculating FPKM and TPM by hand from htseq-count output?
htseq fpkm tpm rna-seq written 4 months ago by Joel Wallenius • 70 • updated 11 weeks ago by Biostar ♦♦ 20
0
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1
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187
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1
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Ensembl ID and counts to FPKM/TPM
R fpkm exon tpm rna-seq written 12 weeks ago by jordan.mandel • 0 • updated 12 weeks ago by h.mon ♦ 26k
5
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1
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406
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1
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How to filter low expressed genes based on TPM expression?
gene R tpm rna-seq filtering written 3 months ago by newbie • 70 • updated 3 months ago by Prakash • 1.4k
3
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1
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183
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1
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problem for 2 different normalization methods in train and test data set
fpkm-uq tpm rna-seq written 5 months ago by modarzi • 80 • updated 5 months ago by Charles Warden ♦ 7.2k
2
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2
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380
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2
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TPM and TMM, which should I use for clustering?
tpm clustering tmm written 5 months ago by demoraesdiogo2017 • 10 • updated 5 months ago by Charles Warden ♦ 7.2k
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0
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241
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0
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TMM to TPM conversion
tpm tmm written 5 months ago by demoraesdiogo2017 • 10
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3
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1.7k
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5 follow
3
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Converting TPM to FPKM
fpkm tpm rna-seq written 2.3 years ago by alexahes • 10 • updated 6 months ago by Charles Warden ♦ 7.2k
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200
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Pseudotime on scRNAseq TPMs?
tpm pseudotime scrnaseq written 6 months ago by m.fletcher • 20
1
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1.2k
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0
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TCGA expression data (TPM)
tcgabiolinks tcga tpm expression written 12 months ago by Folder40g • 120 • updated 6 months ago by Israel Barrantes • 740
0
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0
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480
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0
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Comparing gene expression of specific genes between samples in DESeq2 / R
deseq2 tpm rna-seq written 8 months ago by masicioglu • 0
0
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0
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432
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0
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Transforming RNA-seq data- (tpms) - what is the best practice for dealing with zeros for the purpose of deconvolution?
deconvolution cibersort tpm rna-seq written 8 months ago by nancy • 70
2
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1
answer
758
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1
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Featurecounts normalize by gene length
featurecount deseq2 tpm written 8 months ago by David • 160
6
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3
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479
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3
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DE Analysis starting from TPM matrix? Also, no replicates.
tpm rna-seq written 9 months ago by basch • 0 • updated 9 months ago by Michael Dondrup ♦ 46k
1
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2
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1.6k
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2
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TMM.normalized.FPKM vs .TMM.EXPR.matrix for populating SQL
trinity fpkm tpm sql edger written 2.8 years ago by ando.kelli • 40 • updated 10 months ago by egtabilin • 0
9
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1
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638
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6 follow
1
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Is it possible to make a PCA plot for samples using TPM exprssion values in R?
pca tpm rna-seq written 11 months ago by rimgubaev • 120 • updated 11 months ago by andrew.j.skelton73 ♦ 5.8k
2
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2
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2.1k
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RPKM to TPM conversion?
rpkm tpm conversion rna-seq rna written 14 months ago by brieannsobieski • 0
10
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1
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2.9k
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8 follow
1
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TMM or TPM normalized counts for visualization?
normalization tpm edger tmm written 14 months ago by sam.vanc70 • 30 • updated 14 months ago by Devon Ryan ♦ 91k
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1.2k
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0
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Kallisto TPM values
tpm kallisto written 14 months ago by oliveira.bhn • 10
5
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2
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700
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2
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How to analyse RNA-Seq data with JUST geneID and TPM values
geneid tpm rna-seq dge written 15 months ago by andorjkiss • 10 • updated 15 months ago by igor ♦ 8.1k
1
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1
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804
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1
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Conversion read counts to TPM for microRNAs
tpm mirna written 16 months ago by lessismore • 660 • updated 16 months ago by Buffo • 1.6k
4
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1
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3.2k
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5 follow
1
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Calculating TPM Values
tpm rna-seq sequencing written 16 months ago by biocool2018 • 20 • updated 16 months ago by Tao • 310
2
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1
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824
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1
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Converting expected counts to TPM values
rnaseq expected-counts reads mcf10a tpm written 17 months ago by bhchiang • 0 • updated 17 months ago by Kevin Blighe ♦ 46k
0
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0
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611
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0
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Choice of Gene Length in TPM Calculations
tpm rna-seq written 18 months ago by dec986 • 200
2
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1
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1.4k
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1
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Calculate TPM from cuffnorm count data
fpkm cufflinks tpm cuffnorm rna-seq written 19 months ago by galozs • 20 • updated 19 months ago by Macspider • 2.8k
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