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<prev • 53 results • page 1 of 2 • next >
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Calculating FPKM and TPM by hand from htseq-count output?
htseq fpkm tpm rna-seq written 9 days ago by Joel Wallenius • 10
3
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1
answer
115
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1
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problem for 2 different normalization methods in train and test data set
fpkm-uq tpm rna-seq written 5 weeks ago by modarzi • 70 • updated 5 weeks ago by Charles Warden ♦ 6.6k
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2
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155
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2
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TPM and TMM, which should I use for clustering?
tpm clustering tmm written 7 weeks ago by demoraesdiogo2017 • 10 • updated 7 weeks ago by Charles Warden ♦ 6.6k
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136
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TMM to TPM conversion
tpm tmm written 7 weeks ago by demoraesdiogo2017 • 10
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3
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1.4k
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5 follow
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Converting TPM to FPKM
fpkm tpm rna-seq written 24 months ago by alexahes • 10 • updated 12 weeks ago by Charles Warden ♦ 6.6k
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122
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Pseudotime on scRNAseq TPMs?
tpm pseudotime scrnaseq written 12 weeks ago by m.fletcher • 20
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TCGA expression data (TPM)
tcgabiolinks tcga tpm expression written 8 months ago by Folder40g • 120 • updated 3 months ago by Israel Barrantes • 740
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277
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Comparing gene expression of specific genes between samples in DESeq2 / R
deseq2 tpm rna-seq written 4 months ago by masicioglu • 0
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Transforming RNA-seq data- (tpms) - what is the best practice for dealing with zeros for the purpose of deconvolution?
deconvolution cibersort tpm rna-seq written 4 months ago by nancy • 70
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436
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1
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Featurecounts normalize by gene length
featurecount deseq2 tpm written 4 months ago by David • 150
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3
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297
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3
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DE Analysis starting from TPM matrix? Also, no replicates.
tpm rna-seq written 5 months ago by basch • 0 • updated 5 months ago by Michael Dondrup ♦ 46k
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2
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1.4k
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TMM.normalized.FPKM vs .TMM.EXPR.matrix for populating SQL
trinity fpkm tpm sql edger written 2.5 years ago by ando.kelli • 40 • updated 7 months ago by egtabilin • 0
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Is it possible to make a PCA plot for samples using TPM exprssion values in R?
pca tpm rna-seq written 7 months ago by rimgubaev • 120 • updated 7 months ago by andrew.j.skelton73 ♦ 5.6k
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RPKM to TPM conversion?
rpkm tpm conversion rna-seq rna written 10 months ago by brieannsobieski • 0
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1
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2.0k
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6 follow
1
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TMM or TPM normalized counts for visualization?
normalization tpm edger tmm written 11 months ago by sam.vanc70 • 20 • updated 10 months ago by Devon Ryan ♦ 89k
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Kallisto TPM values
tpm kallisto written 10 months ago by oliveira.bhn • 10
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How to analyse RNA-Seq data with JUST geneID and TPM values
geneid tpm rna-seq dge written 11 months ago by andorjkiss • 10 • updated 11 months ago by igor ♦ 7.6k
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1
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Conversion read counts to TPM for microRNAs
tpm mirna written 12 months ago by lessismore • 610 • updated 12 months ago by Buffo • 1.5k
4
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1
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5 follow
1
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Calculating TPM Values
tpm rna-seq sequencing written 12 months ago by biocool2018 • 20 • updated 12 months ago by Tao • 280
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670
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Converting expected counts to TPM values
rnaseq expected-counts reads mcf10a tpm written 14 months ago by bhchiang • 0 • updated 14 months ago by Kevin Blighe ♦ 41k
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Choice of Gene Length in TPM Calculations
tpm rna-seq written 14 months ago by dec986 • 190
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1
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1.2k
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1
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Calculate TPM from cuffnorm count data
fpkm cufflinks tpm cuffnorm rna-seq written 15 months ago by galozs • 20 • updated 15 months ago by Macspider • 2.8k
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1
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1.3k
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1
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Cutoff for TPM value
tpm transcriptome written 18 months ago by Picasa • 390 • updated 16 months ago by Macspider • 2.8k
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1
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868
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Have Salmon output tabular files from Galaxy; need to import into R for DESeq2
salmon deseq2 tpm rna-seq written 16 months ago by Dennis • 0 • updated 16 months ago by WouterDeCoster ♦ 38k
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1
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1.4k
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1
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Minimal TPM threshold for qPCR measure of gene expression
tximport tpm qpcr rna-seq kallisto written 17 months ago by tlorin • 250
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Filter transcripts based on expression value: TPM vs TMM ?
transcriptome tpm tmm written 18 months ago by Picasa • 390
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1
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3.2k
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5 follow
1
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Data for drawing Heatmaps (RNA-seq)
fpkm heatmap tpm rna-seq tmm written 18 months ago by sd.gamboa.t • 30 • updated 18 months ago by Corentin • 260
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1
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1
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How to calculate TPM of transcripts with isoforms
gene tpm transcript rna-seq written 18 months ago by marcosp.belem • 0 • updated 18 months ago by Rob ♦ 3.3k
4
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1
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3.8k
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5 follow
1
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Filtering out low expressed genes in RNA-Seq data
preprocessing tpm rna-seq written 19 months ago by lessismore • 610 • updated 19 months ago by i.sudbery ♦ 4.3k
11
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11k
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5 follow
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Converting TCGA expression data from FPKM to TPM
fpkm tcga tpm rna-seq expression written 3.5 years ago by Alex Reynolds ♦ 28k • updated 19 months ago by fabio-verdao • 0
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