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Comment: Comment: Why does assigning genes with biomart give me different values than using a tran
13 days ago by bioinfo ▴ 150
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310
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When should I normalize and subset adata objects in scanpy?
scanpy scRNA-seq single-cell
updated 9 weeks ago by 4.3k • written 9 weeks ago by ▴ 150
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1
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258
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How to choose cells that co-express several genes with scanpy?
scanpy scRNA-seq single-cell
updated 11 weeks ago by 4.3k • written 11 weeks ago by ▴ 150
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159
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How to run trajectory analysis with only one cell type using palantir?
palantir scanpy
3 months ago by bioinfo ▴ 150
2
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1
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247
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Do I need to remove doublets after before or after running hashsolo?
hashsolo scanpy scrublet
updated 3 months ago by ▴ 930 • written 3 months ago by ▴ 150
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268
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Comment: Comment: How can I import an unindexed human gtf file in IGV?
3 months ago by bioinfo ▴ 150
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2
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268
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How can I import an unindexed human gtf file in IGV?
igv
3 months ago by bioinfo ▴ 150
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0
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576
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Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
4 months ago by bioinfo ▴ 150
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1
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576
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Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
4 months ago by bioinfo ▴ 150
0
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1
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576
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Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
4 months ago by bioinfo ▴ 150
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6
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576
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Why am I getting such a big difference in alignment rates in kallisto?
kallisto ensembl
4 months ago by bioinfo ▴ 150
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1
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389
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Comment: Comment: Where are the illumina adapters on Trimmomatic take from?
4 months ago by bioinfo ▴ 150
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3
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389
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Where are the illumina adapters on Trimmomatic take from?
rna-seq trimmomatic
updated 4 months ago by 146k • written 4 months ago by ▴ 150
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517
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Comment: Comment: Why does assigning genes with biomart give me different values than using a tran
5 months ago by bioinfo ▴ 150
2
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3
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517
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Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart RNAseq kallisto
13 days ago by bioinfo ▴ 150
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1
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964
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Comment: Comment: How should I make kallisto indexes?
5 months ago by bioinfo ▴ 150
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5
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964
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How should I make kallisto indexes?
kallisto
updated 5 months ago by ★ 6.9k • written 6 months ago by ▴ 150
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432
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Comment: Comment: Can I compare kallisto counts from samples with different amount of reads?
6 months ago by bioinfo ▴ 150
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0
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514
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Comment: Comment: How to row normalize a matrixplot?
6 months ago by bioinfo ▴ 150
1
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2
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432
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Can I compare kallisto counts from samples with different amount of reads?
RNA-seq kallisto
6 months ago by bioinfo ▴ 150
2
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2
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514
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How to row normalize a matrixplot?
scRNA-seq RNA-seq single-cell scanpy
6 months ago by bioinfo ▴ 150
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1
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608
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How to do DE between cells expressing specific gene in scanpy?
scRNA-seq single-cell scanpy
updated 6 months ago by 44k • written 6 months ago by ▴ 150
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0
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520
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Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
6 months ago by bioinfo ▴ 150
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1
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520
views
Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
6 months ago by bioinfo ▴ 150
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5
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520
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How to compare bulk RNA seq data demultiplexed in different ways?
RNA-seq
updated 6 months ago by 44k • written 6 months ago by ▴ 150
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1
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871
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Comment: Comment: How does kallisto handle multi mapped reads?
7 months ago by bioinfo ▴ 150
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1
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871
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Comment: Comment: How does kallisto handle multi mapped reads?
7 months ago by bioinfo ▴ 150
3
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7
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871
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How does kallisto handle multi mapped reads?
kallisto
updated 7 months ago by ★ 6.9k • written 7 months ago by ▴ 150
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2
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596
views
How to add motifs in cellranger-arc reference?
gtf scRNAseq fasta cellranger
updated 5 months ago by • 0 • written 7 months ago by ▴ 150
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0
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403
views
How to do KEGG pathway analysis when I have a gene with multiple entrez IDs?
biomart kegg deseq2
10 months ago by bioinfo ▴ 150
4
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2
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866
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Does DESeq2 correct for library size when importing the counts with DESeqDataSetFromMatrix?
rna-seq deseq2
updated 11 months ago by 20k • written 11 months ago by ▴ 150
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1
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1.2k
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Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
11 months ago by bioinfo ▴ 150
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1
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1.2k
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Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
11 months ago by bioinfo ▴ 150
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1
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1.2k
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Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
11 months ago by bioinfo ▴ 150
3
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7
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1.2k
views
How much adapters is it ok to keep in my samples after RNA seq?
RNA-seq illumina adapters
updated 6 months ago by 44k • written 11 months ago by ▴ 150
0
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0
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908
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Comment: Comment: Why am I getting different results with kallisto?
11 months ago by bioinfo ▴ 150
0
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1
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908
views
Comment: Comment: Why am I getting different results with kallisto?
11 months ago by bioinfo ▴ 150
0
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1
reply
908
views
Comment: Comment: Why am I getting different results with kallisto?
11 months ago by bioinfo ▴ 150
3
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4
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908
views
Why am I getting different results with kallisto?
kallisto
11 months ago by bioinfo ▴ 150
0
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1
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697
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Comment: Comment: Are truseq adapter sequences picked up by FASTQC?
11 months ago by bioinfo ▴ 150
2
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3
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697
views
Are truseq adapter sequences picked up by FASTQC?
fastqc truseq
updated 11 months ago by 146k • written 11 months ago by ▴ 150
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0
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447
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How to convert dataframe properly to anndata?
single-cell python anndata
updated 6 months ago by 44k • written 11 months ago by ▴ 150
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0
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441
views
How to import filtered_tf_bc_matrix and add it to my anndata object?
python anndata atac-seq
updated 6 months ago by 44k • written 11 months ago by ▴ 150
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0
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409
views
How to subsample ATAC fragment file?
single-cell atac-seq scRNA-seq
updated 6 months ago by 44k • written 11 months ago by ▴ 150
0
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0
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932
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Comment: Comment: How to assign gene names after kallisto when I add GFP?
12 months ago by bioinfo ▴ 150
0
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1
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932
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Comment: Comment: How to assign gene names after kallisto when I add GFP?
12 months ago by bioinfo ▴ 150
0
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2
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2.2k
views
Removing constant/zero columns for PCA?
R pca
updated 12 months ago by ★ 28k • written 12 months ago by ▴ 150
1
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4
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932
views
How to assign gene names after kallisto when I add GFP?
tximport RNA-seq kallisto
12 months ago by bioinfo ▴ 150
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0
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3.1k
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Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
12 months ago by bioinfo ▴ 150
0
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0
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3.1k
views
Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
12 months ago by bioinfo ▴ 150
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