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Comment: Comment: Kallisto to tximport to deseq2
1 day ago by bioinfo ▴ 150
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2
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246
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Kallisto to tximport to deseq2
enseml deseq2 Kallisto
updated 1 day ago by 151k • written 2 days ago by ▴ 150
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317
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Comment: Comment: Question about assigning gene names, tximport and DESeq2
4 weeks ago by bioinfo ▴ 150
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2
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317
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Question about assigning gene names, tximport and DESeq2
tximport deseq2
4 weeks ago by bioinfo ▴ 150
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3
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1.5k
views
How to use harmony with scanpy?
scanpy harmony
updated 10 weeks ago by • 0 • written 3 months ago by ▴ 150
2
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2
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532
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Should I not have any adapters after trimming?
RNA-seq
updated 12 weeks ago by 14k • written 12 weeks ago by ▴ 150
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0
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1.5k
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Comment: Comment: How to use harmony with scanpy?
3 months ago by bioinfo ▴ 150
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0
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308
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Does the order of HTOs matter?
hashsolo scanpy
4 months ago by bioinfo ▴ 150
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0
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266
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Regression and scaling in scanpy
scanpy
5 months ago by bioinfo ▴ 150
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0
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797
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Comment: Comment: Why does assigning genes with biomart give me different values than using a tran
7 months ago by bioinfo ▴ 150
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1
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779
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When should I normalize and subset adata objects in scanpy?
scanpy scRNA-seq single-cell
updated 9 months ago by 4.9k • written 9 months ago by ▴ 150
2
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1
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530
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How to choose cells that co-express several genes with scanpy?
scanpy scRNA-seq single-cell
updated 9 months ago by 4.9k • written 9 months ago by ▴ 150
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307
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How to run trajectory analysis with only one cell type using palantir?
palantir scanpy
10 months ago by bioinfo ▴ 150
2
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1
reply
548
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Do I need to remove doublets after before or after running hashsolo?
hashsolo scanpy scrublet
updated 10 months ago by ▴ 940 • written 10 months ago by ▴ 150
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0
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551
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Comment: Comment: How can I import an unindexed human gtf file in IGV?
10 months ago by bioinfo ▴ 150
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2
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551
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How can I import an unindexed human gtf file in IGV?
igv
10 months ago by bioinfo ▴ 150
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0
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1.0k
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Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
11 months ago by bioinfo ▴ 150
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1
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1.0k
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Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
11 months ago by bioinfo ▴ 150
0
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1
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1.0k
views
Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
11 months ago by bioinfo ▴ 150
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6
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1.0k
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Why am I getting such a big difference in alignment rates in kallisto?
kallisto ensembl
11 months ago by bioinfo ▴ 150
0
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1
reply
725
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Comment: Comment: Where are the illumina adapters on Trimmomatic take from?
11 months ago by bioinfo ▴ 150
1
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3
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725
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Where are the illumina adapters on Trimmomatic take from?
rna-seq trimmomatic
updated 11 months ago by 151k • written 11 months ago by ▴ 150
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0
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797
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Comment: Comment: Why does assigning genes with biomart give me different values than using a tran
12 months ago by bioinfo ▴ 150
2
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3
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797
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Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart RNAseq kallisto
7 months ago by bioinfo ▴ 150
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1
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1.7k
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Comment: Comment: How should I make kallisto indexes?
12 months ago by bioinfo ▴ 150
1
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5
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1.7k
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How should I make kallisto indexes?
kallisto
updated 12 months ago by ★ 7.5k • written 13 months ago by ▴ 150
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0
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657
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Comment: Comment: Can I compare kallisto counts from samples with different amount of reads?
13 months ago by bioinfo ▴ 150
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0
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829
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Comment: Comment: How to row normalize a matrixplot?
13 months ago by bioinfo ▴ 150
1
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2
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657
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Can I compare kallisto counts from samples with different amount of reads?
RNA-seq kallisto
13 months ago by bioinfo ▴ 150
2
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2
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829
views
How to row normalize a matrixplot?
scRNA-seq RNA-seq single-cell scanpy
13 months ago by bioinfo ▴ 150
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1
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1.1k
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How to do DE between cells expressing specific gene in scanpy?
scRNA-seq single-cell scanpy
updated 13 months ago by 45k • written 13 months ago by ▴ 150
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0
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922
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Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
13 months ago by bioinfo ▴ 150
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1
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922
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Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
13 months ago by bioinfo ▴ 150
0
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5
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922
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How to compare bulk RNA seq data demultiplexed in different ways?
RNA-seq
updated 13 months ago by 45k • written 13 months ago by ▴ 150
0
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1
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1.4k
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Comment: Comment: How does kallisto handle multi mapped reads?
14 months ago by bioinfo ▴ 150
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1
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1.4k
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Comment: Comment: How does kallisto handle multi mapped reads?
14 months ago by bioinfo ▴ 150
3
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7
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1.4k
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How does kallisto handle multi mapped reads?
kallisto
updated 14 months ago by ★ 7.5k • written 14 months ago by ▴ 150
0
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2
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919
views
How to add motifs in cellranger-arc reference?
gtf scRNAseq fasta cellranger
updated 12 months ago by • 0 • written 14 months ago by ▴ 150
0
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0
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556
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How to do KEGG pathway analysis when I have a gene with multiple entrez IDs?
biomart kegg deseq2
17 months ago by bioinfo ▴ 150
4
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2
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1.1k
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Does DESeq2 correct for library size when importing the counts with DESeqDataSetFromMatrix?
rna-seq deseq2
updated 18 months ago by 21k • written 18 months ago by ▴ 150
0
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1
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1.7k
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Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
18 months ago by bioinfo ▴ 150
0
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1
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1.7k
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Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
18 months ago by bioinfo ▴ 150
0
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1
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1.7k
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Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
18 months ago by bioinfo ▴ 150
3
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7
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1.7k
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How much adapters is it ok to keep in my samples after RNA seq?
RNA-seq illumina adapters
updated 13 months ago by 45k • written 18 months ago by ▴ 150
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0
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1.2k
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Comment: Comment: Why am I getting different results with kallisto?
18 months ago by bioinfo ▴ 150
0
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1
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1.2k
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Comment: Comment: Why am I getting different results with kallisto?
18 months ago by bioinfo ▴ 150
0
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1
reply
1.2k
views
Comment: Comment: Why am I getting different results with kallisto?
18 months ago by bioinfo ▴ 150
3
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4
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1.2k
views
Why am I getting different results with kallisto?
kallisto
18 months ago by bioinfo ▴ 150
0
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1
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964
views
Comment: Comment: Are truseq adapter sequences picked up by FASTQC?
18 months ago by bioinfo ▴ 150
2
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3
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964
views
Are truseq adapter sequences picked up by FASTQC?
fastqc truseq
updated 18 months ago by 151k • written 18 months ago by ▴ 150
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