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Showing :
questions
3
votes
9
replies
2.4k
views
CNVKit does not output all the accessible regions in the targets bed file
CNVkit
cnv
bed
target
wgs
24 months ago by
ashenflower
▴ 30
0
votes
0
replies
657
views
Control-FREEC output
cancer
CNV
copy
FREEC
number
2.0 years ago by
ashenflower
▴ 30
0
votes
0
replies
544
views
CNVkit: setting arbitrary bin size for WGS data
CNV
CNVkit
wgs
updated 20 months ago by
Ram
44k • written 2.0 years ago by
ashenflower
▴ 30
2
votes
0
replies
457
views
Absolute and relative Copy numbers, tumor and ploidy
number
copy
ploidy
tumor
2.0 years ago by
ashenflower
▴ 30
1
vote
3
replies
1.1k
views
Using Copy Number Alterations detected in other studies for the same tumor cell line
genomes
cancer
CNV
variants
CNA
updated 20 months ago by
lethalfang
▴ 160 • written 2.1 years ago by
ashenflower
▴ 30
0
votes
2
replies
720
views
Benchmark data for variant calling assessment
genomes
variants
benchmark
calling
structural
2.1 years ago by
ashenflower
▴ 30
2
votes
11
replies
1.7k
views
BLAST, set a limit to the number of hits in output
blastn
output
blast
hits
updated 2.2 years ago by
Asaf
10k • written 2.2 years ago by
ashenflower
▴ 30
0
votes
3
replies
928
views
creating a subset of a BLAST database
blastdb_aliastool
blastn
blastdbcmd
blast
updated 17 months ago by
Ram
44k • written 2.4 years ago by
ashenflower
▴ 30
0
votes
0
replies
970
views
Krona is not finding the NCBI taxonomy IDs even after running updateTaxonomy.sh
metagenomics
kraken2
NCBI
taxonomy
krona
2.5 years ago by
ashenflower
▴ 30
0
votes
2
replies
1.5k
views
Duplicate headers In Sam File
sam
samtools
bwa
updated 17 months ago by
Ram
44k • written 2.9 years ago by
ashenflower
▴ 30
5
votes
3
replies
1.3k
views
jellyfish count discrepancy between results obtained with and without -C option
counting
kmers
discrepancy
jellyfish
updated 2.9 years ago by
onestop_data
▴ 330 • written 3.0 years ago by
ashenflower
▴ 30
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