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Comment: Comment: can not find certain genes: Ensembl_Gene_Id To Entrezgene using Biomart
3.2 years ago by catherine ▴ 250
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1.8k
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Comment: Comment: can not find certain genes: Ensembl_Gene_Id To Entrezgene using Biomart
3.2 years ago by catherine ▴ 250
0
votes
0
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1.8k
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Comment: Comment: can not find certain genes: Ensembl_Gene_Id To Entrezgene using Biomart
3.2 years ago by catherine ▴ 250
0
votes
7
replies
1.8k
views
can not find certain genes: Ensembl_Gene_Id To Entrezgene using Biomart
gene R Biomart ID
updated 3.2 years ago by 153k • written 3.2 years ago by ▴ 250
0
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2
replies
4.4k
views
how to merge a subset dataset back to master seurat object
scRNA RNAseq
updated 4.2 years ago by ★ 19k • written 4.2 years ago by ▴ 250
2
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0
replies
1.1k
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resampling RNA-seq and sample size
RNA-Seq gene omics
4.9 years ago by catherine ▴ 250
0
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1
reply
56k
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Comment: C: How Can I Convert Bam/Sam To Wiggle
updated 6.9 years ago by 45k • written 10.5 years ago by ▴ 250
53
votes
21
replies
40k
views
17 follow
extract only geneID and gene symbol from GTF file
gtf python genome
updated 13 months ago by • 0 • written 10.4 years ago by ▴ 250
0
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1
reply
1.9k
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linear regression on EPICmethylation data
methylation R edgeR
updated 8.1 years ago by ★ 1.2k • written 8.1 years ago by ▴ 250
0
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0
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2.5k
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Comment: C: methylation probe numbers
8.3 years ago by catherine ▴ 250
2
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4
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2.5k
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methylation probe numbers
next-gen Assembly methylationEPIC
updated 8.3 years ago by 6.6k • written 8.3 years ago by ▴ 250
3
votes
5
replies
5.1k
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TSS file for D.melanogaster
tss drosophila
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 250
1
vote
1
reply
5.8k
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macs2 output-narrowpeak file understanding?
ChIP-Seq macs
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 250
12
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2
replies
9.2k
views
how to know the strands of MACS call peaks
ChIP-Seq macs homer
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 250
0
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0
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56k
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Answer: A: How Can I Convert Bam/Sam To Wiggle
10.5 years ago by catherine ▴ 250
0
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1
reply
107k
views
Comment: C: merge large amount of fastq files into a single one
10.5 years ago by catherine ▴ 250
57
votes
11
replies
107k
views
8 follow
merge large amount of fastq files into a single one
ChIP-Seq fastq
updated 3.3 years ago by 45k • written 10.5 years ago by ▴ 250
0
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1
reply
4.5k
views
cuffcompare error: cannot locate input file
cufflinks RNA-Seq
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 250
0
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0
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7.5k
views
Answer: Answer: ERROR on tophat: Mapping left_kept_reads to genome Athaliana with Bowtie2
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 250
0
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5
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7.5k
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ERROR on tophat: Mapping left_kept_reads to genome Athaliana with Bowtie2
tophat RNA-Seq
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 250
0
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0
replies
7.5k
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Comment: C: ERROR on tophat: Mapping left_kept_reads to genome Athaliana with Bowtie2
10.6 years ago by catherine ▴ 250
0
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0
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7.5k
views
Comment: C: ERROR on tophat: Mapping left_kept_reads to genome Athaliana with Bowtie2
10.6 years ago by catherine ▴ 250
0
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1
reply
3.1k
views
MAnorm error: unable to open files
ChIP-Seq
updated 4.4 years ago by 45k • written 10.8 years ago by ▴ 250
0
votes
6
replies
6.5k
views
normalize on chip-seq data
ChIP-Seq normalization
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 250
0
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1
reply
3.6k
views
Comment: Comment: How and Where can I get the reference genome to run bowtie ?
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 250
0
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3
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3.6k
views
How and Where can I get the reference genome to run bowtie ?
ChIP-Seq
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 250
0
votes
2
replies
5.1k
views
gene IDs not recognized by DAVID
gene GO-term
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 250
0
votes
1
reply
6.5k
views
Comment: Comment: normalize on chip-seq data
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 250
0
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0
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6.5k
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Comment: C: normalize on chip-seq data
10.8 years ago by catherine ▴ 250
1
vote
1
reply
2.4k
views
bed file run macs error
ChIP-Seq macs
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 250
6
votes
7
replies
3.3k
views
Errors with sort-bed
ChIP-Seq bedops
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 250
0
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0
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3.3k
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Comment: Comment: Errors with sort-bed
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 250
0
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0
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3.3k
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Comment: C: Errors with sort-bed
10.9 years ago by catherine ▴ 250
0
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1
reply
3.3k
views
Comment: C: Errors with sort-bed
10.9 years ago by catherine ▴ 250
3
votes
1
reply
2.8k
views
visualize tiling array file to IGB
microarray genome igb
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 250
0
votes
0
replies
2.4k
views
how to use peaksplitter via macs
ChIP-Seq MACS
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 250
4
votes
5
replies
6.3k
views
how to install macs and use it
ChIP-Seq
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 250
1
vote
1
reply
3.9k
views
BSgenome format error in subseq()
R
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 250
0
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0
replies
5.1k
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Comment: C: TSS file for D.melanogaster
11.2 years ago by catherine ▴ 250
0
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0
replies
5.1k
views
Comment: C: TSS file for D.melanogaster
11.2 years ago by catherine ▴ 250
1
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1
reply
4.7k
views
how to do vmatchPattern() for DNAStringSet [edited]
R
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 250
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