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How to get REF/ALT allele for a list of rsid and SNP notations
BED R Variant VCF SNP
updated 6 weeks ago by 153k • written 6 weeks ago by ▴ 250
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2.6k
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Answer: Answer: Help in Log2 transform CPM count
13 months ago by Meisam ▴ 250
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3
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1.3k
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Submitting NGS data to ArrayExpress via Aspera
ebi aspera arrayexpress
updated 20 months ago by 153k • written 20 months ago by ▴ 250
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1.3k
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Answer: Answer: Submitting NGS data to ArrayExpress via Aspera
20 months ago by Meisam ▴ 250
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2.7k
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Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
20 months ago by Meisam ▴ 250
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1.1k
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Comment: Comment: BBDuk error: with these 4 lines....
22 months ago by Meisam ▴ 250
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0
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1.1k
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Comment: Comment: Problem with Mageck paired analysis
2.0 years ago by Meisam ▴ 250
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3.6k
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Comment: Comment: Change transparency/alpha in seurat's vlnPlot()
2.1 years ago by Meisam ▴ 250
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1
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1.9k
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Comment: Comment: Using bedtools intersect with custom txt files
2.2 years ago by Meisam ▴ 250
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3
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1.9k
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Using bedtools intersect with custom txt files
bedtools GWAS intersect SNP
2.2 years ago by Meisam ▴ 250
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1
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2.3k
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Comment: Comment: Functional clustering of proteins
2.3 years ago by Meisam ▴ 250
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0
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1.4k
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Answer: Answer: Filtering genes after TPM normalization
2.3 years ago by Meisam ▴ 250
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0
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1.5k
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Comment: Comment: Gene enrichment analysis
2.3 years ago by Meisam ▴ 250
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1
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2.5k
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Comment: Comment: how to create correlation matrix R
2.3 years ago by Meisam ▴ 250
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1
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1.2k
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Comment: Comment: fgsea/clusterProfiler Packages for nCounter data enrichment analysis
2.3 years ago by Meisam ▴ 250
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1
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3.5k
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Comment: Comment: MacOS Quicklook plugin for gtf and gff3 files?
2.3 years ago by Meisam ▴ 250
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2.0k
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Comment: Comment: Unable to install Cluster Profiler through Docker File
2.3 years ago by Meisam ▴ 250
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0
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1.2k
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Answer: Answer: Extract transcript ID and gene ID from ITAG4.1_gene_models.gff
2.4 years ago by Meisam ▴ 250
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1.4k
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Answer: Answer: Gene Set Enrichment Analysis
2.4 years ago by Meisam ▴ 250
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0
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2.3k
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Comment: Comment: R ggrepel for overlapping text in the whole plot
2.4 years ago by Meisam ▴ 250
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0
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2.0k
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Comment: Comment: rRNA contaminants RNASeq
2.4 years ago by Meisam ▴ 250
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1
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2.0k
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Answer: Answer: rRNA contaminants RNASeq
2.4 years ago by Meisam ▴ 250
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3.2k
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Comment: Comment: when to use trimmomatic
2.4 years ago by Meisam ▴ 250
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1
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3.2k
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Comment: Comment: when to use trimmomatic
2.4 years ago by Meisam ▴ 250
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1
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3.2k
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Answer: Answer: when to use trimmomatic
2.4 years ago by Meisam ▴ 250
2
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1
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3.1k
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Answer: Answer: How to correct unknown Batch effect?
2.4 years ago by Meisam ▴ 250
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1
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2.1k
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Comment: Comment: go analysis result error
2.4 years ago by Meisam ▴ 250
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1
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2.1k
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Comment: Comment: go analysis result error
2.4 years ago by Meisam ▴ 250
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1
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2.1k
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Answer: Answer: go analysis result error
2.4 years ago by Meisam ▴ 250
2
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0
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1.3k
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Answer: Answer: segmentation fault error
2.5 years ago by Meisam ▴ 250
3
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1
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1.2k
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Answer: Answer: 'closure' is not subsettable error in r shiny
2.5 years ago by Meisam ▴ 250
3
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1
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2.3k
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Retrieve gene list output from gprofiler2 after over-representation analysis
gprofiler ontology transcriptomics gprofiler2 RNA-Seq gene
updated 2.6 years ago by 89k • written 2.6 years ago by ▴ 250
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858
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Answer: Answer: Trimmomatic
2.7 years ago by Meisam ▴ 250
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0
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475
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How to get the highest overall gene expression value for a subset of genes among multiple transcriptome lists
RNA-Seq CCLE
2.9 years ago by Meisam ▴ 250
2
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1
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2.8k
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Counting gene vs exons in featureCounts
RNA-Seq subread annotation featureCounts
updated 2.9 years ago by ▴ 130 • written 3.0 years ago by ▴ 250
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