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Comment:
Comment: How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Pac
6 months ago by
Ngrin
• 0
1
vote
3
replies
637
views
How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Package?
multi-omics
CNV
R
updated 5 months ago by
Zhenyu Zhang
★ 1.2k • written 6 months ago by
Ngrin
• 0
0
votes
1
reply
810
views
Comment:
Comment: How to handle duplicated genes in TCGA data?
6 months ago by
Ngrin
• 0
0
votes
4
replies
810
views
How to handle duplicated genes in TCGA data?
TCGA
GDC
mRNA
updated 6 months ago by
txema.heredia
▴ 190 • written 6 months ago by
Ngrin
• 0
0
votes
1
reply
647
views
Comment:
Comment: How to compute TPM normalized values for TCGA miRNA data?
7 months ago by
Ngrin
• 0
1
vote
3
replies
647
views
How to compute TPM normalized values for TCGA miRNA data?
TCGA
normalization
TPM
miRNA
updated 7 months ago by
swbarnes2
14k • written 7 months ago by
Ngrin
• 0
0
votes
1
reply
1.3k
views
Comment:
Comment: TCGA2STAT Error: Firehose connection
7 months ago by
Ngrin
• 0
0
votes
1
reply
1.3k
views
Comment:
Comment: TCGA2STAT Error: Firehose connection
7 months ago by
Ngrin
• 0
2
votes
1
reply
428
views
Compute p-value, having log fold change
p-value
fold-change
updated 8 months ago by
Ram
44k • written 8 months ago by
Ngrin
• 0
0
votes
0
replies
1.3k
views
Comment:
Comment: Help in choosing the right metric for ranking genes in fgsea
10 months ago by
Ngrin
• 0
0
votes
0
replies
1.3k
views
Comment:
Comment: Help in choosing the right metric for ranking genes in fgsea
10 months ago by
Ngrin
• 0
0
votes
1
reply
1.3k
views
Comment:
Comment: Help in choosing the right metric for ranking genes in fgsea
10 months ago by
Ngrin
• 0
4
votes
7
replies
1.3k
views
Help in choosing the right metric for ranking genes in fgsea
FGSEA
GSEA
10 months ago by
Ngrin
• 0
0
votes
0
replies
352
views
Find equivalent pathways between KEGG, Reactome, and WikiPathways
pathway
mapping
database
12 months ago by
Ngrin
• 0
1
vote
1
reply
644
views
Omics data and Mammography data repositories
repository
omics
mammography
updated 15 months ago by
aidangcruickshank
▴ 10 • written 15 months ago by
Ngrin
• 0
0
votes
0
replies
1.2k
views
Comment:
Comment: zero byte files in sratoolkit.3.0.1-ubuntu64
22 months ago by
Ngrin
• 0
0
votes
1
reply
1.2k
views
Comment:
Comment: zero byte files in sratoolkit.3.0.1-ubuntu64
22 months ago by
Ngrin
• 0
0
votes
1
reply
1.2k
views
Comment:
Comment: zero byte files in sratoolkit.3.0.1-ubuntu64
22 months ago by
Ngrin
• 0
0
votes
1
reply
1.1k
views
Error 134 while aligning using hisat2
hisat2
alignment
sam
bam
updated 22 months ago by
Fabio Marroni
★ 3.0k • written 22 months ago by
Ngrin
• 0
0
votes
1
reply
1.0k
views
Comment:
Comment: Having two SRR records and accordingly four fastq files per sample, how should I
22 months ago by
Ngrin
• 0
3
votes
3
replies
1.0k
views
Having two SRR records and accordingly four fastq files per sample, how should I deal with this?
fastq
sra-toolkit
rna-seq
updated 22 months ago by
ATpoint
85k • written 22 months ago by
Ngrin
• 0
0
votes
0
replies
447
views
RNA-seq datasets with raw read counts for two group comparison
RNA-seq
updated 22 months ago by
Ram
44k • written 22 months ago by
Ngrin
• 0
0
votes
0
replies
436
views
Create VCF file to use as input for SIFT
SIFT
mutation
vcf
variant
2.1 years ago by
Ngrin
• 0
0
votes
0
replies
941
views
Comment:
Comment: High number of unmapped reads in STAR
2.2 years ago by
Ngrin
• 0
0
votes
1
reply
941
views
Comment:
Comment: High number of unmapped reads in STAR
2.2 years ago by
Ngrin
• 0
0
votes
4
replies
941
views
High number of unmapped reads in STAR
read
count
alignement
STAR
genecount
2.2 years ago by
Ngrin
• 0
0
votes
0
replies
666
views
Sankey plot with not 100 percent node in R
Plot
R
RStudio
Pathway
GeneExpression
2.2 years ago by
Ngrin
• 0
0
votes
1
reply
836
views
Comment:
Comment: Star Create genome index files
2.2 years ago by
Ngrin
• 0
2
votes
3
replies
836
views
Star Create genome index files
genome
Alignment
STAR
updated 2.2 years ago by
ATpoint
85k • written 2.2 years ago by
Ngrin
• 0
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