Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
2
replies
975
views
Where to get a reference gene model in bed fomat? Is the only option converting it from gtf to bed?
RNA-seq
updated 17 months ago by ▴ 140 • written 2.1 years ago by ▴ 40
1
vote
0
replies
1.2k
views
Comment: Comment: How to manually trim FASTA file sequences and store it in a new FASTA file?
2.0 years ago by pubsurfted ▴ 40
2
votes
2
replies
1.2k
views
How to manually trim FASTA file sequences and store it in a new FASTA file?
FASTA
2.0 years ago by pubsurfted ▴ 40
0
votes
1
reply
2.0k
views
Comment: Comment: Rseqc infer_experiment.py: 0 usable reads sampled and unknown data type
2.1 years ago by pubsurfted ▴ 40
0
votes
1
reply
2.0k
views
Comment: Comment: Rseqc infer_experiment.py: 0 usable reads sampled and unknown data type
2.1 years ago by pubsurfted ▴ 40
0
votes
1
reply
2.0k
views
Comment: Comment: Rseqc infer_experiment.py: 0 usable reads sampled and unknown data type
2.1 years ago by pubsurfted ▴ 40
0
votes
1
reply
2.0k
views
Comment: Comment: Rseqc infer_experiment.py: 0 usable reads sampled and unknown data type
2.1 years ago by pubsurfted ▴ 40
3
votes
9
replies
2.0k
views
Rseqc infer_experiment.py: 0 usable reads sampled and unknown data type
rseqc infer_experiment.py RNA-seq
updated 7 months ago by ▴ 100 • written 2.1 years ago by ▴ 40
9
votes
7
replies
3.0k
views
Building index with kallisto, keeps getting killed.
kallisto
updated 2.1 years ago by 55k • written 2.1 years ago by ▴ 40
0
votes
0
replies
3.0k
views
Comment: Comment: Building index with kallisto, keeps getting killed.
2.1 years ago by pubsurfted ▴ 40
0
votes
1
reply
3.0k
views
Comment: Comment: Building index with kallisto, keeps getting killed.
2.1 years ago by pubsurfted ▴ 40
0
votes
0
replies
3.3k
views
Comment: Comment: How to find rna strand direction before alignment?
2.1 years ago by pubsurfted ▴ 40
0
votes
1
reply
3.3k
views
Comment: Comment: How to find rna strand direction before alignment?
2.1 years ago by pubsurfted ▴ 40
0
votes
2
replies
3.3k
views
Comment: Comment: How to find rna strand direction before alignment?
2.1 years ago by pubsurfted ▴ 40
13
votes
18
replies
3.3k
views
6 follow
How to find rna strand direction before alignment?
RNA-Seq
updated 2.1 years ago by 9.0k • written 2.1 years ago by ▴ 40
3
votes
2
replies
1.0k
views
Does anyone have experience using findtail?
Poly-A-tail
updated 2.1 years ago by 44k • written 2.1 years ago by ▴ 40
2
votes
1
reply
631
views
Understanding how-are-we-stranded-here and salmon parameters
RNA-Seq
updated 2.1 years ago by 148k • written 2.1 years ago by ▴ 40
1
vote
0
replies
3.3k
views
Comment: Comment: How to find rna strand direction before alignment?
2.1 years ago by pubsurfted ▴ 40
6
votes
5
replies
2.8k
views
6 follow
When is it advantageous to use a non-splice aware aligner like BowTie2 over a splice aware one like Hisat2?
illumina Rna-seq paired short-reads
updated 2.1 years ago by 21k • written 2.1 years ago by ▴ 40
1
vote
1
reply
738
views
PolyA Tail Detection in RNA-seq data
RNA-seq PolyA
updated 20 months ago by 44k • written 2.1 years ago by ▴ 40
6
votes
4
replies
930
views
Tools for strand direction detection RNA-Seq
Rna-seq strandedness
updated 2.1 years ago by 6.2k • written 2.1 years ago by ▴ 40
2
votes
1
reply
668
views
Is it okay to use dna.toplevel file for alignment if primary assembly file is not available?
rnaseq index aligment ensembl hisat2
updated 2.2 years ago by 148k • written 2.2 years ago by ▴ 40
0
votes
0
replies
432
views
Database for Poly A tail length of different species
database Poly-A-tail
updated 2.1 years ago by 44k • written 2.2 years ago by ▴ 40
0
votes
0
replies
1.7k
views
Comment: Comment: Equivalent commands on different trimming tools for comparison
2.2 years ago by pubsurfted ▴ 40
2
votes
5
replies
1.7k
views
Equivalent commands on different trimming tools for comparison
comparison python trimming output
2.2 years ago by pubsurfted ▴ 40
0
votes
0
replies
1.7k
views
Comment: Comment: Equivalent commands on different trimming tools for comparison
2.2 years ago by pubsurfted ▴ 40
2
votes
0
replies
2.7k
views
Comment: Comment: How to create a basic GUI for rna seq pipeline
2.2 years ago by pubsurfted ▴ 40
0
votes
1
reply
1.7k
views
Comment: Comment: Equivalent commands on different trimming tools for comparison
2.2 years ago by pubsurfted ▴ 40
0
votes
1
reply
485
views
3' end base accuracy
fastq Trimming reads
updated 2.2 years ago by 148k • written 2.2 years ago by ▴ 40
18
votes
9
replies
2.7k
views
7 follow
How to create a basic GUI for rna seq pipeline
Nextflow RNASeq GUI Pipeline
updated 17 months ago by ▴ 600 • written 2.3 years ago by ▴ 40
30 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6