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Comment: Comment: How to manually trim FASTA file sequences and store it in a new FASTA file?
6 weeks ago by pubsurfted ▴ 40
2
votes
2
replies
515
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How to manually trim FASTA file sequences and store it in a new FASTA file?
FASTA
6 weeks ago by pubsurfted ▴ 40
0
votes
0
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762
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Comment: Comment: Rseqc infer_experiment.py: 0 usable reads sampled and unknown data type
6 weeks ago by pubsurfted ▴ 40
0
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1
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762
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Comment: Comment: Rseqc infer_experiment.py: 0 usable reads sampled and unknown data type
6 weeks ago by pubsurfted ▴ 40
0
votes
1
reply
762
views
Comment: Comment: Rseqc infer_experiment.py: 0 usable reads sampled and unknown data type
6 weeks ago by pubsurfted ▴ 40
0
votes
1
reply
762
views
Comment: Comment: Rseqc infer_experiment.py: 0 usable reads sampled and unknown data type
6 weeks ago by pubsurfted ▴ 40
3
votes
8
replies
762
views
Rseqc infer_experiment.py: 0 usable reads sampled and unknown data type
rseqc infer_experiment.py RNA-seq
6 weeks ago by pubsurfted ▴ 40
1
vote
1
reply
276
views
Where to get a reference gene model in bed fomat? Is the only option converting it from gtf to bed?
RNA-seq
updated 8 weeks ago by 2.9k • written 8 weeks ago by ▴ 40
9
votes
7
replies
537
views
Building index with kallisto, keeps getting killed.
kallisto
updated 8 weeks ago by 52k • written 8 weeks ago by ▴ 40
0
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0
replies
537
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Comment: Comment: Building index with kallisto, keeps getting killed.
8 weeks ago by pubsurfted ▴ 40
0
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1
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537
views
Comment: Comment: Building index with kallisto, keeps getting killed.
8 weeks ago by pubsurfted ▴ 40
0
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0
replies
1.0k
views
Comment: Comment: How to find rna strand direction before alignment?
8 weeks ago by pubsurfted ▴ 40
0
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1
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1.0k
views
Comment: Comment: How to find rna strand direction before alignment?
8 weeks ago by pubsurfted ▴ 40
0
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2
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1.0k
views
Comment: Comment: How to find rna strand direction before alignment?
8 weeks ago by pubsurfted ▴ 40
12
votes
18
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1.0k
views
6 follow
How to find rna strand direction before alignment?
RNA-Seq
updated 8 weeks ago by 7.5k • written 8 weeks ago by ▴ 40
3
votes
2
replies
361
views
Does anyone have experience using findtail?
Poly-A-tail
updated 8 weeks ago by 37k • written 8 weeks ago by ▴ 40
2
votes
1
reply
208
views
Understanding how-are-we-stranded-here and salmon parameters
RNA-Seq
updated 8 weeks ago by 125k • written 8 weeks ago by ▴ 40
1
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0
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1.0k
views
Comment: Comment: How to find rna strand direction before alignment?
8 weeks ago by pubsurfted ▴ 40
6
votes
5
replies
860
views
6 follow
When is it advantageous to use a non-splice aware aligner like BowTie2 over a splice aware one like Hisat2?
illumina Rna-seq paired short-reads
updated 10 weeks ago by 16k • written 10 weeks ago by ▴ 40
1
vote
1
reply
247
views
PolyA Tail Detection in RNA-seq data
PolyA Tool RNA-seq
updated 11 weeks ago by 3.4k • written 11 weeks ago by ▴ 40
6
votes
4
replies
342
views
Tools for strand direction detection RNA-Seq
Rna-seq strandedness
updated 11 weeks ago by 5.7k • written 11 weeks ago by ▴ 40
2
votes
1
reply
248
views
Is it okay to use dna.toplevel file for alignment if primary assembly file is not available?
rnaseq index aligment ensembl hisat2
updated 3 months ago by 125k • written 3 months ago by ▴ 40
0
votes
0
replies
198
views
Database for Poly A tail length of different species
database Poly-A-tail
updated 9 weeks ago by 37k • written 3 months ago by ▴ 40
0
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0
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550
views
Comment: Comment: Equivalent commands on different trimming tools for comparison
3 months ago by pubsurfted ▴ 40
2
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5
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550
views
Equivalent commands on different trimming tools for comparison
comparison python trimming output
3 months ago by pubsurfted ▴ 40
0
votes
0
replies
550
views
Comment: Comment: Equivalent commands on different trimming tools for comparison
3 months ago by pubsurfted ▴ 40
2
votes
0
replies
753
views
Comment: Comment: How to create a basic GUI for rna seq pipeline
3 months ago by pubsurfted ▴ 40
0
votes
1
reply
550
views
Comment: Comment: Equivalent commands on different trimming tools for comparison
3 months ago by pubsurfted ▴ 40
0
votes
1
reply
181
views
3' end base accuracy
fastq Trimming reads
updated 3 months ago by 125k • written 3 months ago by ▴ 40
15
votes
7
replies
753
views
6 follow
How to create a basic GUI for rna seq pipeline
Nextflow RNASeq GUI Pipeline
3 months ago by pubsurfted ▴ 40
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