Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
3
votes
0
replies
2.3k
views
Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
9 months ago by e.r.zakiev ▴ 230
17
votes
7
replies
2.3k
views
When should I NOT apply batch correction for my single-cell RNAseq data?
scRNA-seq batch-correction
updated 9 months ago by 44k • written 9 months ago by ▴ 230
3
votes
2
replies
1.4k
views
Answer: Answer: Good alignment rate for DNA-seq data
9 months ago by e.r.zakiev ▴ 230
0
votes
1
reply
686
views
Comment: Comment: Cloud Computing w.r.t. AWS, Google Cloud, Microsoft Azure
9 months ago by e.r.zakiev ▴ 230
1
vote
0
replies
1.4k
views
Comment: Comment: remove batch effect
9 months ago by e.r.zakiev ▴ 230
0
votes
0
replies
1.5k
views
Comment: Comment: Why is chromHMM's binarizeBed with the -peaks argument not recommended for broad
10 months ago by e.r.zakiev ▴ 230
0
votes
0
replies
1.5k
views
Comment: Comment: Extract RPKM values from Diffbind
11 months ago by e.r.zakiev ▴ 230
0
votes
1
reply
822
views
Comment: Comment: barcodes not show up in overrepresented sequences in FASTQC
12 months ago by e.r.zakiev ▴ 230
0
votes
1
reply
822
views
Comment: Comment: barcodes not show up in overrepresented sequences in FASTQC
12 months ago by e.r.zakiev ▴ 230
6
votes
5
replies
822
views
barcodes not show up in overrepresented sequences in FASTQC
ribo-seq barcodes
updated 12 months ago by 144k • written 12 months ago by ▴ 230
0
votes
0
replies
671
views
Answer: Answer: Where can I find a TF-target gene network for skin tissue
13 months ago by e.r.zakiev ▴ 230
0
votes
0
replies
529
views
Comment: Comment: Panther db Reference List
14 months ago by e.r.zakiev ▴ 230
3
votes
2
replies
529
views
Panther db Reference List
pantherdb enrichment-tests
updated 14 months ago by 44k • written 14 months ago by ▴ 230
3
votes
0
replies
678
views
Answer: Answer: Sewage covid sequence analysis using C-Wap
14 months ago by e.r.zakiev ▴ 230
0
votes
0
replies
37k
views
Comment: Comment: ATAC-seq peak calling with MACS
15 months ago by e.r.zakiev ▴ 230
3
votes
1
reply
505
views
Why not use ONLY promoter-bound peaks when testing for enrichment in differentially-bound regions?
ChIP-seq ChIPseeker GO
updated 16 months ago by 44k • written 16 months ago by ▴ 230
2
votes
0
replies
3.1k
views
Answer: Answer: ClusterProfiler enrichKEGG – remove organism name in plots?
16 months ago by e.r.zakiev ▴ 230
0
votes
1
reply
3.1k
views
Comment: Comment: ClusterProfiler enrichKEGG – remove organism name in plots?
16 months ago by e.r.zakiev ▴ 230
0
votes
1
reply
1.5k
views
Comment: Comment: msigdbr returns the same genesets for mouse as in for human,
16 months ago by e.r.zakiev ▴ 230
1
vote
0
replies
1.9k
views
Comment: Comment: Sorting a STAR-output bam file with samtools leads to a significant reduction in
16 months ago by e.r.zakiev ▴ 230
0
votes
0
replies
1.9k
views
Comment: Comment: Sorting a STAR-output bam file with samtools leads to a significant reduction in
16 months ago by e.r.zakiev ▴ 230
0
votes
0
replies
1.5k
views
Comment: Comment: msigdbr returns the same genesets for mouse as in for human,
16 months ago by e.r.zakiev ▴ 230
0
votes
0
replies
6.0k
views
Comment: Comment: Ensembl Hg38 dna, dna_rm, and dna_sm
16 months ago by e.r.zakiev ▴ 230
2
votes
5
replies
1.5k
views
msigdbr returns the same genesets for mouse as in for human,
msigdbr
updated 16 months ago by 13k • written 16 months ago by ▴ 230
0
votes
0
replies
20k
views
Comment: Comment: Cell Type Marker Databases?
16 months ago by e.r.zakiev ▴ 230
12
votes
8
replies
1.9k
views
Sorting a STAR-output bam file with samtools leads to a significant reduction in size of the sorted bam file
samtools STAR
16 months ago by e.r.zakiev ▴ 230
0
votes
0
replies
11k
views
Comment: Comment: How to submit multithreaded jobs on SLURM and determine number of threads?
16 months ago by e.r.zakiev ▴ 230
0
votes
0
replies
464
views
Double-pass with STAR for better detection of spliced variants in assessing quality of FFPE RNAseq data: should I go for it?
RNA-seq STAR
updated 16 months ago by 44k • written 16 months ago by ▴ 230
0
votes
1
reply
2.7k
views
Comment: Comment: Splice aware vs splice unaware aligners?
16 months ago by e.r.zakiev ▴ 230
0
votes
0
replies
45k
views
Comment: Comment: Snakemake vs. Nextflow: strengths and weaknesses
16 months ago by e.r.zakiev ▴ 230
0
votes
0
replies
37k
views
Comment: Comment: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
16 months ago by e.r.zakiev ▴ 230
0
votes
1
reply
4.9k
views
Comment: Comment: What does the decimal ending of a transcript id mean?
16 months ago by e.r.zakiev ▴ 230
3
votes
1
reply
772
views
Which reference transcriptome/genome to use for mus musculus if I know the particular strain involved in the experiment?
mice alignment genome transcriptome
updated 17 months ago by 44k • written 17 months ago by ▴ 230
0
votes
0
replies
19k
views
Comment: Comment: RNA-Seq analysis using STAR and Salmon
17 months ago by e.r.zakiev ▴ 230
0
votes
1
reply
1.6k
views
Comment: Comment: Reference genome
17 months ago by e.r.zakiev ▴ 230
0
votes
0
replies
1.6k
views
Comment: Comment: blast engine error empty blast query vector
17 months ago by e.r.zakiev ▴ 230
4
votes
1
reply
609
views
TruSeq Illumina adapters are BLASTed with a high confidence to some genes/terms
RNAseq adapters Truseq BLAST
updated 17 months ago by 84k • written 17 months ago by ▴ 230
0
votes
0
replies
5.0k
views
Comment: Comment: Methodological problems are extremely common for enrichment analysis - beware th
21 months ago by e.r.zakiev ▴ 230
0
votes
0
replies
5.0k
views
Comment: Comment: Methodological problems are extremely common for enrichment analysis - beware th
21 months ago by e.r.zakiev ▴ 230
1
vote
0
replies
847
views
Answer: Answer: Gene Rank for GSEA Preranked analysis?
21 months ago by e.r.zakiev ▴ 230
90 results • Page 2 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6