Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
all
1
vote
0
replies
1.2k
views
Comment:
Comment: How to decide what gene set libraries to use in your GSEA analysis
13 months ago by
e.r.zakiev
▴ 230
3
votes
0
replies
3.1k
views
Comment:
Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
13 months ago by
e.r.zakiev
▴ 230
17
votes
7
replies
3.1k
views
When should I NOT apply batch correction for my single-cell RNAseq data?
scRNA-seq
batch-correction
updated 13 months ago by
Ram
44k • written 13 months ago by
e.r.zakiev
▴ 230
3
votes
2
replies
1.6k
views
Answer:
Answer: Good alignment rate for DNA-seq data
13 months ago by
e.r.zakiev
▴ 230
0
votes
1
reply
778
views
Comment:
Comment: Cloud Computing w.r.t. AWS, Google Cloud, Microsoft Azure
13 months ago by
e.r.zakiev
▴ 230
1
vote
0
replies
1.5k
views
Comment:
Comment: remove batch effect
13 months ago by
e.r.zakiev
▴ 230
0
votes
0
replies
1.5k
views
Comment:
Comment: Why is chromHMM's binarizeBed with the -peaks argument not recommended for broad
14 months ago by
e.r.zakiev
▴ 230
0
votes
0
replies
1.7k
views
Comment:
Comment: Extract RPKM values from Diffbind
14 months ago by
e.r.zakiev
▴ 230
0
votes
1
reply
930
views
Comment:
Comment: barcodes not show up in overrepresented sequences in FASTQC
15 months ago by
e.r.zakiev
▴ 230
0
votes
1
reply
930
views
Comment:
Comment: barcodes not show up in overrepresented sequences in FASTQC
15 months ago by
e.r.zakiev
▴ 230
6
votes
5
replies
930
views
barcodes not show up in overrepresented sequences in FASTQC
ribo-seq
barcodes
updated 15 months ago by
GenoMax
146k • written 15 months ago by
e.r.zakiev
▴ 230
0
votes
0
replies
709
views
Answer:
Answer: Where can I find a TF-target gene network for skin tissue
16 months ago by
e.r.zakiev
▴ 230
0
votes
0
replies
568
views
Comment:
Comment: Panther db Reference List
17 months ago by
e.r.zakiev
▴ 230
3
votes
2
replies
568
views
Panther db Reference List
pantherdb
enrichment-tests
updated 17 months ago by
Ram
44k • written 17 months ago by
e.r.zakiev
▴ 230
3
votes
0
replies
729
views
Answer:
Answer: Sewage covid sequence analysis using C-Wap
17 months ago by
e.r.zakiev
▴ 230
0
votes
0
replies
38k
views
Comment:
Comment: ATAC-seq peak calling with MACS
18 months ago by
e.r.zakiev
▴ 230
3
votes
1
reply
555
views
Why not use ONLY promoter-bound peaks when testing for enrichment in differentially-bound regions?
ChIP-seq
ChIPseeker
GO
updated 19 months ago by
Ram
44k • written 19 months ago by
e.r.zakiev
▴ 230
2
votes
0
replies
3.6k
views
Answer:
Answer: ClusterProfiler enrichKEGG – remove organism name in plots?
19 months ago by
e.r.zakiev
▴ 230
0
votes
1
reply
3.6k
views
Comment:
Comment: ClusterProfiler enrichKEGG – remove organism name in plots?
19 months ago by
e.r.zakiev
▴ 230
0
votes
1
reply
1.6k
views
Comment:
Comment: msigdbr returns the same genesets for mouse as in for human,
19 months ago by
e.r.zakiev
▴ 230
1
vote
0
replies
2.2k
views
Comment:
Comment: Sorting a STAR-output bam file with samtools leads to a significant reduction in
19 months ago by
e.r.zakiev
▴ 230
0
votes
0
replies
2.2k
views
Comment:
Comment: Sorting a STAR-output bam file with samtools leads to a significant reduction in
19 months ago by
e.r.zakiev
▴ 230
0
votes
0
replies
1.6k
views
Comment:
Comment: msigdbr returns the same genesets for mouse as in for human,
19 months ago by
e.r.zakiev
▴ 230
0
votes
0
replies
6.1k
views
Comment:
Comment: Ensembl Hg38 dna, dna_rm, and dna_sm
19 months ago by
e.r.zakiev
▴ 230
2
votes
5
replies
1.6k
views
msigdbr returns the same genesets for mouse as in for human,
msigdbr
updated 19 months ago by
igor
13k • written 19 months ago by
e.r.zakiev
▴ 230
0
votes
0
replies
20k
views
Comment:
Comment: Cell Type Marker Databases?
19 months ago by
e.r.zakiev
▴ 230
12
votes
8
replies
2.2k
views
Sorting a STAR-output bam file with samtools leads to a significant reduction in size of the sorted bam file
samtools
STAR
19 months ago by
e.r.zakiev
▴ 230
0
votes
0
replies
11k
views
Comment:
Comment: How to submit multithreaded jobs on SLURM and determine number of threads?
19 months ago by
e.r.zakiev
▴ 230
0
votes
0
replies
514
views
Double-pass with STAR for better detection of spliced variants in assessing quality of FFPE RNAseq data: should I go for it?
RNA-seq
STAR
updated 19 months ago by
Ram
44k • written 19 months ago by
e.r.zakiev
▴ 230
0
votes
1
reply
2.9k
views
Comment:
Comment: Splice aware vs splice unaware aligners?
19 months ago by
e.r.zakiev
▴ 230
0
votes
0
replies
45k
views
Comment:
Comment: Snakemake vs. Nextflow: strengths and weaknesses
20 months ago by
e.r.zakiev
▴ 230
0
votes
0
replies
37k
views
Comment:
Comment: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
20 months ago by
e.r.zakiev
▴ 230
0
votes
1
reply
5.0k
views
Comment:
Comment: What does the decimal ending of a transcript id mean?
20 months ago by
e.r.zakiev
▴ 230
3
votes
1
reply
814
views
Which reference transcriptome/genome to use for mus musculus if I know the particular strain involved in the experiment?
mice
alignment
genome
transcriptome
updated 20 months ago by
Ram
44k • written 20 months ago by
e.r.zakiev
▴ 230
0
votes
0
replies
19k
views
Comment:
Comment: RNA-Seq analysis using STAR and Salmon
20 months ago by
e.r.zakiev
▴ 230
0
votes
1
reply
1.8k
views
Comment:
Comment: Reference genome
20 months ago by
e.r.zakiev
▴ 230
0
votes
0
replies
1.7k
views
Comment:
Comment: blast engine error empty blast query vector
20 months ago by
e.r.zakiev
▴ 230
4
votes
1
reply
656
views
TruSeq Illumina adapters are BLASTed with a high confidence to some genes/terms
RNAseq
adapters
Truseq
BLAST
updated 20 months ago by
ATpoint
85k • written 20 months ago by
e.r.zakiev
▴ 230
0
votes
0
replies
5.3k
views
Comment:
Comment: Methodological problems are extremely common for enrichment analysis - beware th
2.0 years ago by
e.r.zakiev
▴ 230
0
votes
0
replies
5.3k
views
Comment:
Comment: Methodological problems are extremely common for enrichment analysis - beware th
2.0 years ago by
e.r.zakiev
▴ 230
1
vote
0
replies
939
views
Answer:
Answer: Gene Rank for GSEA Preranked analysis?
2.0 years ago by
e.r.zakiev
▴ 230
91 results • Page
2 of 2
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6