Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
7
votes
3
replies
1.3k
views
Nextflow R Markdown render output to different directory: Missing output file(s)
rstudio r rmarkdown nextflow
updated 16 months ago by 82k • written 16 months ago by ▴ 350
2
votes
2
replies
836
views
Rscript Nextflow Error: unable to load shared object
HPC R Nextflow
14 months ago by Eliveri ▴ 350
6
votes
5
replies
1.2k
views
Samtools equivalent of "CleanSam" Picard GATK?
picard samtools gatk
14 months ago by Eliveri ▴ 350
3
votes
3
replies
893
views
SamSort gatk invalid argument / no space left on disk
picard gatk samsort nextflow
14 months ago by Eliveri ▴ 350
1
vote
0
replies
1.5k
views
Comment: Comment: Running Rscript in Nextflow (Rmd file not found)
17 months ago by Eliveri ▴ 350
7
votes
5
replies
1.5k
views
Running Rscript in Nextflow (Rmd file not found)
Rscript R Nextflow
14 months ago by Eliveri ▴ 350
3
votes
1
reply
973
views
Trimmomatic adapter file not found when running using conda environment (Nextflow)
Conda Adapter Nextflow Trimmomatic environment
updated 17 months ago by 161k • written 17 months ago by ▴ 350
11
votes
4
replies
1.7k
views
How to select or subset process outputs in Nextflow DSL2?
DSL2 Nextflow
14 months ago by Eliveri ▴ 350
1
vote
0
replies
1.4k
views
Comment: Comment: Nextflow output from different processes mixed up as input in later processes
17 months ago by Eliveri ▴ 350
5
votes
3
replies
1.4k
views
Nextflow output from different processes mixed up as input in later processes
DSL2 process Nextflow
14 months ago by Eliveri ▴ 350
8
votes
4
replies
1.1k
views
Allocating memory for samtools sort in nextflow?
samtools nextflow
14 months ago by Eliveri ▴ 350
10
votes
2
replies
2.3k
views
How define Nextflow parameters (e.g. time/cpu/memory) in config or script?
Nextflow
updated 17 months ago by ▴ 470 • written 17 months ago by ▴ 350
4
votes
2
replies
721
views
Can you concatenate fastq.gz (zipped) and fastq (non-zipped) files?
fastq gzip
updated 18 months ago by 161k • written 18 months ago by ▴ 350
2
votes
1
reply
1.3k
views
Answer: Answer: BWA alignment failing after adding nextflow.config file?
18 months ago by Eliveri ▴ 350
0
votes
0
replies
1.3k
views
Comment: Comment: BWA alignment failing after adding nextflow.config file?
18 months ago by Eliveri ▴ 350
5
votes
4
replies
1.3k
views
BWA alignment failing after adding nextflow.config file?
cluster nextflow hpc meme bwa
updated 18 months ago by 82k • written 18 months ago by ▴ 350
1
vote
1
reply
822
views
How to Choose Trimmomatic Min Length Parameter
Trimmomatic
updated 18 months ago by ★ 1.2k • written 18 months ago by ▴ 350
0
votes
0
replies
737
views
Comment: Comment: Match header (list) to sequence in fasta file quickly?
18 months ago by Eliveri ▴ 350
3
votes
3
replies
737
views
Match header (list) to sequence in fasta file quickly?
fasta grep
18 months ago by Eliveri ▴ 350
1
vote
1
reply
1.7k
views
Comment: Comment: Filter out Bam not overlapping with Bed File (keeping a read and its mate)?
18 months ago by Eliveri ▴ 350
5
votes
6
replies
1.7k
views
Filter out Bam not overlapping with Bed File (keeping a read and its mate)?
samtools bam bed
updated 10 months ago by 43k • written 18 months ago by ▴ 350
0
votes
0
replies
593
views
Comment: Comment: Filter out Bam not overlapping with Bed File?
18 months ago by Eliveri ▴ 350
3
votes
2
replies
593
views
Filter out Bam not overlapping with Bed File?
bed bam samtools
18 months ago by Eliveri ▴ 350
5
votes
4
replies
1.2k
views
Converting Bam file to Fasta (Zipped)
bedtools samtools
updated 10 months ago by 43k • written 18 months ago by ▴ 350
74 results • Page 2 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6