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Help with species tree with orthofinder, iqtree and branch labeling
iqtree trimal CAFE5 orthofinder mafft
updated 5 weeks ago by 154k • written 5 weeks ago by ▴ 190
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5.3k
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Comment: Comment: Help with species tree with orthofinder, iqtree and branch labeling
5 weeks ago by san96 ▴ 190
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Comment: Comment: Concatenate multiple MUSCLE alignment result to build a phylogenetic tree
5 weeks ago by san96 ▴ 190
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6.4k
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Comment: Comment: How to use CAFE from Orthofinder Results
9 weeks ago by san96 ▴ 190
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1.1k
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Comment: Comment: Parameters for annotation with maker
4 months ago by san96 ▴ 190
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1.1k
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Comment: Comment: Parameters for annotation with maker
8 months ago by san96 ▴ 190
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4
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1.1k
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Parameters for annotation with maker
Maker masking plant annotation
4 months ago by san96 ▴ 190
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14k
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Comment: Comment: How to extract fasta sequences from assembled transcripts generated by Stringtie
8 months ago by san96 ▴ 190
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14k
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Comment: Comment: How to extract fasta sequences from assembled transcripts generated by Stringtie
8 months ago by san96 ▴ 190
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14k
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Comment: Comment: How to extract fasta sequences from assembled transcripts generated by Stringtie
8 months ago by san96 ▴ 190
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1.0k
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Comment: Comment: bioinformatics tutorial on Oxford
9 months ago by san96 ▴ 190
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1.0k
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Answer: Answer: How to plot PCA for DEGs
9 months ago by san96 ▴ 190
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3.1k
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Comment: Comment: ORA with clusterProfiler
9 months ago by san96 ▴ 190
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3.1k
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Comment: Comment: ORA with clusterProfiler
10 months ago by san96 ▴ 190
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1
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3.1k
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Comment: Comment: ORA with clusterProfiler
10 months ago by san96 ▴ 190
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2
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876
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Plant diploid genome, phashed, CLR reads, PECAT
diploid genome Phased
10 months ago by san96 ▴ 190
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876
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Answer: Answer: Plant diploid genome, phashed, CLR reads, PECAT
10 months ago by san96 ▴ 190
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0
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876
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Comment: Comment: Plant diploid genome, phashed, CLR reads, PECAT
10 months ago by san96 ▴ 190
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864
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Comment: Comment: MAKER has many FAILED
13 months ago by san96 ▴ 190
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3
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864
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MAKER has many FAILED
genome softmask MAKER annotation
updated 13 months ago by 154k • written 13 months ago by ▴ 190
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5.0k
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Comment: Comment: Status of maker annotation
13 months ago by san96 ▴ 190
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1
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5.0k
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Comment: Comment: Status of maker annotation
14 months ago by san96 ▴ 190
1
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1
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576
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Maker genome softmask
Maker genome softmask plant
updated 14 months ago by ★ 1.3k • written 14 months ago by ▴ 190
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425
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RepeatMasker without DNA transposons, satellites and SINEs
transposons DNA RepeatModeler RepeatMasker
16 months ago by san96 ▴ 190
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0
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966
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Comment: Comment: SPADES output
16 months ago by san96 ▴ 190
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2
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966
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SPADES output
contigs scaffolds output SPADES
16 months ago by san96 ▴ 190
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2.9k
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Comment: Comment: Basic guidance on Using 10x Genomics Data for De Novo Assembly
16 months ago by san96 ▴ 190
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2.9k
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Comment: Comment: Basic guidance on Using 10x Genomics Data for De Novo Assembly
16 months ago by san96 ▴ 190
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0
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2.9k
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Comment: Comment: Basic guidance on Using 10x Genomics Data for De Novo Assembly
16 months ago by san96 ▴ 190
1
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1
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2.9k
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Comment: Comment: Basic guidance on Using 10x Genomics Data for De Novo Assembly
16 months ago by san96 ▴ 190
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1
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2.9k
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Answer: Answer: Basic guidance on Using 10x Genomics Data for De Novo Assembly
16 months ago by san96 ▴ 190
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0
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1.4k
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Comment: Comment: About runing Pilon on individual chromosomes when polish draft genome assembly
17 months ago by san96 ▴ 190
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0
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612
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Comment: Comment: Polish a large genome with Pilon
17 months ago by san96 ▴ 190
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1
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612
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Polish a large genome with Pilon
Pilon Pacbio Polish Illumina
17 months ago by san96 ▴ 190
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0
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2.0k
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Comment: Comment: Longest transcript variant per gene
17 months ago by san96 ▴ 190
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2.0k
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Comment: Comment: Longest transcript variant per gene
17 months ago by san96 ▴ 190
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2.0k
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Comment: Comment: Longest transcript variant per gene
17 months ago by san96 ▴ 190
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2.0k
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Comment: Comment: Longest transcript variant per gene
17 months ago by san96 ▴ 190
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7
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2.0k
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Longest transcript variant per gene
transcript longest variant orthofinder
17 months ago by san96 ▴ 190
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0
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1.9k
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Comment: Comment: Perfom a Gene Ontology Analysis from GO terms txt file
18 months ago by san96 ▴ 190
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1
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1.9k
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Answer: Answer: Perfom a Gene Ontology Analysis from GO terms txt file
18 months ago by san96 ▴ 190
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1
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1.9k
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Comment: Comment: Perfom a Gene Ontology Analysis from GO terms file
18 months ago by san96 ▴ 190
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0
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370
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Analysis of the gene family of a genome.
Genome gene-family
updated 18 months ago by 45k • written 18 months ago by ▴ 190
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1.0k
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Comment: Comment: GSEA analysis in R
18 months ago by san96 ▴ 190
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0
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1.5k
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Comment: Comment: Integration of transcriptomics and proteomics: difficult matching names
18 months ago by san96 ▴ 190
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0
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3.0k
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Comment: Comment: BRAKER3 genome annotation
18 months ago by san96 ▴ 190
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1
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802
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Comment: Comment: RNAseq 1 control 2 different treatment
18 months ago by san96 ▴ 190
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1
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3.0k
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Comment: Comment: BRAKER3 genome annotation
18 months ago by san96 ▴ 190
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1.1k
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Comment: Comment: Extracting information from gff3 file produced by augustus
18 months ago by san96 ▴ 190
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0
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737
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Answer: Answer: How do I identify gene duplication or paralogs in an annotated reference genome
18 months ago by san96 ▴ 190
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