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Using ANNOVAR to identify variants falling within ALU elements
ANNOVAR
4 months ago by Aiswarya ▴ 20
1
vote
2
replies
646
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Deseq2 shows differential expression while TPM values are not significantly different
Deseq2 TPM
updated 14 months ago by ★ 1.9k • written 14 months ago by ▴ 20
3
votes
4
replies
1.2k
views
Differential RNA editing using edgeR
editing RNA GLM
16 months ago by Aiswarya ▴ 20
1
vote
1
reply
575
views
Transcript count normalization using Deseq2
transcript DESeq2
updated 18 months ago by 88k • written 18 months ago by ▴ 20
2
votes
11
replies
2.1k
views
Extracting regions around sites in VCF file and writing them as fasta sequences/files
VCF fasta
updated 20 months ago by 151k • written 20 months ago by ▴ 20
1
vote
1
reply
885
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Annotate VCF with RepeatMasker
RepeatMasker VCF annotation
updated 21 months ago by ★ 2.4k • written 21 months ago by ▴ 20
1
vote
3
replies
1.8k
views
Logistic regression on longitudinal data
logistic-regression
updated 21 months ago by ★ 1.9k • written 21 months ago by ▴ 20
0
votes
1
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1.3k
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Stringtie prepDE.py script
deseq2 stringtie
updated 2.3 years ago by ★ 2.4k • written 2.3 years ago by ▴ 20
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