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questions
13
votes
9
replies
6.4k
views
6 follow
should stop codon be counted as part of CDS
gtf
cds
stop codon
updated 3.7 years ago by
sullis02
▴ 40 • written 8.3 years ago by
-_-
★ 1.1k
1
vote
1
reply
1.6k
views
How does deseq2 encode more than 2 levels
RNA-Seq
DESeq2
differential expression
updated 5.7 years ago by
Biostar
20 • written 7.5 years ago by
-_-
★ 1.1k
1
vote
8
replies
4.1k
views
Where are mutation files (MAF) for TCGA normal samples on Firebrowse
TCGA
Normal
mutation
Firebrowse
Firehose
updated 6.1 years ago by
Wenhu_Cao
▴ 100 • written 7.6 years ago by
-_-
★ 1.1k
4
votes
3
replies
2.2k
views
softclip vs mismatch at either end
SAM
alignment
updated 6.2 years ago by
Biostar
20 • written 8.3 years ago by
-_-
★ 1.1k
2
votes
1
reply
3.0k
views
Definition of transcript vs gene
transcript
gene
6.6 years ago by
-_-
★ 1.1k
13
votes
30
replies
6.4k
views
Is it appropriate to assume genes of similar expression level also have similar variance?
deseq
differential-expression
updated 6.9 years ago by
Santosh Anand
5.8k • written 6.9 years ago by
-_-
★ 1.1k
3
votes
3
replies
3.2k
views
How to reproduce TCGA rsem values from firebrowse
TCGA
expression
rsem
updated 7.2 years ago by
GenoMax
147k • written 7.2 years ago by
-_-
★ 1.1k
0
votes
2
replies
2.3k
views
Normal blood RNA-Seq data from cancer (any cancer) patients
cancer
blood
RNA-Seq
normal
7.7 years ago by
-_-
★ 1.1k
0
votes
4
replies
2.7k
views
Where can I find the analysis ID to Firehose TCGA RNA-Seq samples
RNA-Seq
TCGA
Firehose
Firebrowse
7.7 years ago by
-_-
★ 1.1k
9
votes
11
replies
2.7k
views
Why SeqIO doesn't read the last record
fasta
biopython
8.6 years ago by
-_-
★ 1.1k
0
votes
0
replies
2.2k
views
MG-RAST database preparation protocal
Metagenomics
MG-RAST
updated 2.4 years ago by
Ram
44k • written 9.0 years ago by
-_-
★ 1.1k
0
votes
0
replies
2.1k
views
copmaring mpileup parameters: -B vs -BQ0
samtools
mpileup
BAQ
updated 9.9 years ago by
Ram
44k • written 9.9 years ago by
-_-
★ 1.1k
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