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620
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Strange volcano - DEGs with p.adj=0 look weird
RNA-seq DEGs
updated 6 months ago by ▴ 570 • written 6 months ago by ▴ 40
0
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0
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802
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Comment: Comment: RNA-seq, three comparisons - stick to one linear model, or use separate models?
7 months ago by noodlejackson ▴ 40
1
vote
2
replies
802
views
RNA-seq, three comparisons - stick to one linear model, or use separate models?
statistics mixed-effect-model stats RNAseq linear-model
updated 7 months ago by 45k • written 7 months ago by ▴ 40
0
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0
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712
views
Comment: Comment: How to make amazing UMAP to spatialPlot GIF
8 months ago by noodlejackson ▴ 40
1
vote
2
replies
712
views
How to make amazing UMAP to spatialPlot GIF
umap spatial
8 months ago by noodlejackson ▴ 40
6
votes
6
replies
1.4k
views
Multiple factors in DESeq2
deseq2
8 months ago by noodlejackson ▴ 40
1
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0
replies
1.4k
views
Answer: Answer: Multiple factors in DESeq2
8 months ago by noodlejackson ▴ 40
0
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1
reply
1.4k
views
Comment: Comment: Multiple factors in DESeq2
8 months ago by noodlejackson ▴ 40
0
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0
replies
1.4k
views
Comment: Comment: Multiple factors in DESeq2
8 months ago by noodlejackson ▴ 40
0
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0
replies
1.4k
views
Comment: Comment: Multiple factors in DESeq2
8 months ago by noodlejackson ▴ 40
0
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0
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1.0k
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Comment: Comment: Dimensionality reduction using RNA and protein expression
9 months ago by noodlejackson ▴ 40
4
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4
replies
1.0k
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Dimensionality reduction using RNA and protein expression
dimensionality-reduction RNA-seq spatial
9 months ago by noodlejackson ▴ 40
0
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0
replies
2.3k
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Comment: Comment: Speed up umap parameter optimisation?
9 months ago by noodlejackson ▴ 40
0
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1
reply
2.3k
views
Comment: Comment: Speed up umap parameter optimisation?
9 months ago by noodlejackson ▴ 40
3
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7
replies
2.3k
views
Speed up umap parameter optimisation?
rna-seq umap r
updated 9 months ago by ★ 19k • written 9 months ago by ▴ 40
0
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0
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2.3k
views
Comment: Comment: Speed up umap parameter optimisation?
9 months ago by noodlejackson ▴ 40
0
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0
replies
774
views
Comment: Comment: MT and rRNA gene expression in bulk RNA-seq sample QC filtering
10 months ago by noodlejackson ▴ 40
13
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7
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2.1k
views
7 follow
Forum: Premade RNA-seq pipeline or custom
rna-seq pipeline
updated 10 months ago by 22k • written 10 months ago by ▴ 40
4
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2
replies
774
views
MT and rRNA gene expression in bulk RNA-seq sample QC filtering
RNA-seq
10 months ago by noodlejackson ▴ 40
1
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0
replies
1.6k
views
Comment: Comment: Batch correction preserving biological difference
14 months ago by noodlejackson ▴ 40
0
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1
reply
1.6k
views
Comment: Comment: Batch correction preserving biological difference
14 months ago by noodlejackson ▴ 40
4
votes
6
replies
1.6k
views
Batch correction preserving biological difference
scRNA-Seq batch-correction
14 months ago by noodlejackson ▴ 40
0
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1
reply
1.6k
views
Comment: Comment: Batch correction preserving biological difference
14 months ago by noodlejackson ▴ 40
2
votes
1
reply
742
views
Associations with small-ish patient clinical data with bulk RNA-seq expression
statistics ai rna-seq stats machine-learning
updated 16 months ago by ★ 2.1k • written 16 months ago by ▴ 40
0
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0
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16k
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Comment: Comment: WGCNA soft thresholding problem
20 months ago by noodlejackson ▴ 40
1
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3
replies
1.4k
views
GO, KEGG, GSEA analysis with ~5 DEGs
GO KEGG
updated 23 months ago by 103k • written 23 months ago by ▴ 40
0
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0
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1.4k
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Comment: Comment: GO, KEGG, GSEA analysis with ~5 DEGs
23 months ago by noodlejackson ▴ 40
0
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0
replies
2.0k
views
Comment: Comment: RNA-Seq: Comparing Expression between Cancer Grades
2.0 years ago by noodlejackson ▴ 40
7
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7
replies
2.0k
views
RNA-Seq: Comparing Expression between Cancer Grades
factors rna-seq grades transcriptomics
2.0 years ago by noodlejackson ▴ 40
1
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0
replies
2.0k
views
Comment: Comment: RNA-Seq: Comparing Expression between Cancer Grades
2.0 years ago by noodlejackson ▴ 40
0
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2
replies
2.0k
views
Comment: Comment: RNA-Seq: Comparing Expression between Cancer Grades
2.0 years ago by noodlejackson ▴ 40
0
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0
replies
1.4k
views
Comment: Comment: Matched samples in Deseq2
2.3 years ago by noodlejackson ▴ 40
0
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1
reply
1.4k
views
Comment: Comment: Matched samples in Deseq2
2.3 years ago by noodlejackson ▴ 40
0
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0
replies
1.7k
views
Comment: Comment: Heatmap in R; how to change the order of Row names
updated 2.3 years ago by 45k • written 2.3 years ago by ▴ 40
1
vote
4
replies
1.4k
views
Matched samples in Deseq2
RNA-seq deseq2
2.3 years ago by noodlejackson ▴ 40
0
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0
replies
4.0k
views
Answer: Answer: How can I make all my PCA plots the same shape using ggplots?
2.6 years ago by noodlejackson ▴ 40
0
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0
replies
2.0k
views
Comment: Comment: No Replicate RNA-Seq (But still biological replicates)
2.6 years ago by noodlejackson ▴ 40
0
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0
replies
1.2k
views
Comment: Comment: Do Benjamini-Hochberg p.adj values get less strict when analysing only one super
2.6 years ago by noodlejackson ▴ 40
1
vote
2
replies
1.2k
views
Do Benjamini-Hochberg p.adj values get less strict when analysing only one superfamily only? RNA-seq
pvalue p-value rna-seq Benjamini-Hochberg
updated 2.6 years ago by 103k • written 2.6 years ago by ▴ 40
5
votes
4
replies
2.0k
views
No Replicate RNA-Seq (But still biological replicates)
replicates RNA-Seq
2.6 years ago by noodlejackson ▴ 40
0
votes
0
replies
1.1k
views
Comment: Comment: Seeking feedback on RNA-seq analysis with low sample size and custom pathways
2.6 years ago by noodlejackson ▴ 40
41 results • Page 1 of 1
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