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How to normalise Nanopore mRNA sequencing data between two cell lines
Nanopore RNAseq Normalization
updated 6 months ago by ▴ 160 • written 7 months ago by ▴ 50
1
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1
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738
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How to normalise the RNAseq data without spike in?
Nanopore spike-in RNAseq
11 months ago by Mo ▴ 50
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1
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1.1k
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Comment: Comment: How to normalise RNA seq data from two independent experiments to the same scale
19 months ago by Mo ▴ 50
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1
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1.1k
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Comment: Comment: How to normalise RNA seq data from two independent experiments to the same scale
19 months ago by Mo ▴ 50
1
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5
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1.1k
views
How to normalise RNA seq data from two independent experiments to the same scale.
RNAseq
updated 19 months ago by ★ 1.9k • written 19 months ago by ▴ 50
4
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6
replies
4.5k
views
6 follow
How to discard alignments from SAM/BAM file that have mismatches
BAM SAM minimap nanopore
updated 2.0 years ago by 20k • written 2.3 years ago by ▴ 50
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0
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1.1k
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Comment: Comment: How to sort cd-hit-est cluster file
2.1 years ago by Mo ▴ 50
1
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4
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1.1k
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How to sort cd-hit-est cluster file
sort cd-hit-est
2.1 years ago by Mo ▴ 50
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0
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1.1k
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Comment: Comment: How to sort cd-hit-est cluster file
2.1 years ago by Mo ▴ 50
0
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0
replies
928
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Comment: Comment: Modify the code to take most abundant reads from a cluster and process it.
2.1 years ago by Mo ▴ 50
0
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2
replies
928
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Modify the code to take most abundant reads from a cluster and process it.
cd-hit-est clustering
2.1 years ago by Mo ▴ 50
0
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0
replies
5.6k
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Comment: Comment: Which minimap2 parameters to set while performing mapping to avoid such mismatch
2.1 years ago by Mo ▴ 50
2
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1
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5.6k
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Comment: Comment: Which minimap2 parameters to set while performing mapping to avoid such mismatch
2.1 years ago by Mo ▴ 50
0
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0
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5.6k
views
Comment: Comment: Which minimap2 parameters to set while performing mapping to avoid such mismatch
2.1 years ago by Mo ▴ 50
0
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1
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5.6k
views
Comment: Comment: Which minimap2 parameters to set while performing mapping to avoid such mismatch
2.1 years ago by Mo ▴ 50
7
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9
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5.6k
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Which minimap2 parameters to set while performing mapping to avoid such mismatches
minimap2
2.1 years ago by Mo ▴ 50
1
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0
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4.5k
views
Comment: Comment: How to discard alignments from SAM/BAM file that have mismatches
2.3 years ago by Mo ▴ 50
0
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0
replies
4.5k
views
Comment: Comment: How to discard alignments from SAM/BAM file that have mismatches
2.3 years ago by Mo ▴ 50
0
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2
replies
1.7k
views
guppy basecaller giving error while basecalling
base-calling guppy nanopore fast5
updated 2.3 years ago by 9.8k • written 2.3 years ago by ▴ 50
1
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1
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1.7k
views
Reads with highest MAPQ values from SAM files are showing mismatches to reference sequence and IGV classified them as supplementary reads
minimap Nanopore IGV
updated 2.4 years ago by 154k • written 2.4 years ago by ▴ 50
11
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4
replies
3.2k
views
how to sort a fasta file
fasta
updated 2.4 years ago by 166k • written 2.4 years ago by ▴ 50
0
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0
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5.3k
views
Comment: Comment: minimap's SAM file MAPQ value for the unique alignments
2.4 years ago by Mo ▴ 50
0
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3
replies
5.3k
views
minimap's SAM file MAPQ value for the unique alignments
minimap MAPQ RNAseq
2.4 years ago by Mo ▴ 50
0
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0
replies
2.5k
views
Comment: Comment: IGV grey vs white lines
2.4 years ago by Mo ▴ 50
0
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2
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2.5k
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IGV grey vs white lines
minimap nanopore IGV
updated 2.4 years ago by 154k • written 2.4 years ago by ▴ 50
0
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0
replies
1.3k
views
Comment: Comment: How to extract out gene specific reads from concatenated fastq file
2.4 years ago by Mo ▴ 50
0
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3
replies
1.3k
views
How to extract out gene specific reads from concatenated fastq file
fastq gene-specific RNA-seq nanopore
2.4 years ago by Mo ▴ 50
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