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0
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0
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219
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What does ANOVA test over CoxPH model mean?
SurvivalAnalysis CoxPH ANOVA Survival
3 months ago by Manuel Sokolov Ravasqueira ▴ 100
1
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0
replies
755
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Comment: Comment: GetPileupSummaries intervals-list with Targeted Sequencing?
4 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
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1
reply
755
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Comment: Comment: GetPileupSummaries intervals-list with Targeted Sequencing?
5 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
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1
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755
views
Comment: Comment: GetPileupSummaries intervals-list with Targeted Sequencing?
5 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
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0
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5.8k
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Comment: Comment: How to create interval list from reference fasta or dict file?
5 months ago by Manuel Sokolov Ravasqueira ▴ 100
2
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6
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755
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GetPileupSummaries intervals-list with Targeted Sequencing?
GetPileUpSummaries GATK Variant-Calling
updated 4 months ago by 43k • written 5 months ago by ▴ 100
0
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0
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280
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Apply BSQR for Targeted Sequencing
GenomicPipelines GATK variant-calling
5 months ago by Manuel Sokolov Ravasqueira ▴ 100
4
votes
2
replies
659
views
Visualization package for Maf Files using Python
Python maftools Visualization MAF
updated 6 months ago by ★ 1.5k • written 6 months ago by ▴ 100
0
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0
replies
334
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Convert from limma voom normalized matrix each gene to high/low
limma-voom RNA-SEQ
updated 7 months ago by 43k • written 7 months ago by ▴ 100
2
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1
reply
621
views
Consensus Cluster takes normalized gene counts or raw gene counts?
R Gene-Expression ConsensusCluster DGE
updated 8 months ago by ★ 2.4k • written 8 months ago by ▴ 100
0
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1
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1.3k
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Comment: Comment: Enricher - Hyper Geometric Test Details
8 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
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1
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1.3k
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Comment: Comment: Enricher - Hyper Geometric Test Details
8 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
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1
reply
1.3k
views
Comment: Comment: Enricher - Hyper Geometric Test Details
8 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
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1
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1.3k
views
Comment: Comment: Enricher - Hyper Geometric Test Details
8 months ago by Manuel Sokolov Ravasqueira ▴ 100
6
votes
9
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1.3k
views
Enricher - Hyper Geometric Test Details
Enricher ClusterProfiler DGE ORA
updated 8 months ago by 82k • written 8 months ago by ▴ 100
1
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0
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576
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Answer: Answer: Over Representation Analysis over one specific pathway
8 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
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0
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576
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Comment: Comment: Over Representation Analysis over one specific pathway
8 months ago by Manuel Sokolov Ravasqueira ▴ 100
3
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3
replies
576
views
Over Representation Analysis over one specific pathway
GSEA DGE ORA
8 months ago by Manuel Sokolov Ravasqueira ▴ 100
5
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1
reply
634
views
Enricher with Gene Symbols
DGE ClusterProfiler Enrich ORA
updated 8 months ago by ★ 2.4k • written 8 months ago by ▴ 100
1
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0
replies
282
views
How to define TMB-High/TMB-Low and Gene Expression High/Low?
Voom Limma TMB RNASeq GeneExpression
8 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
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0
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595
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Comment: Comment: Gene set enrichment analysis / Kegg analysis
8 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
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0
replies
741
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Comment: Comment: What are the reasons to find so few Differentially expressed genes (DEGs)?
8 months ago by Manuel Sokolov Ravasqueira ▴ 100
1
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1
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759
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Comment: Comment: LogFc vs t_statistic to estimate over/under expressed genes?
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
8
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4
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759
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LogFc vs t_statistic to estimate over/under expressed genes?
T-Test Limma DGE Voom
updated 9 months ago by 82k • written 9 months ago by ▴ 100
2
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1
reply
587
views
Maf File Bar Code
GATK Maf vcf
updated 9 months ago by ★ 1.2k • written 9 months ago by ▴ 100
11
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3
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542
views
Send BAM files from server to cluster
BAM
updated 9 months ago by 82k • written 9 months ago by ▴ 100
4
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5
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697
views
Keplen Meyer Curve Dropping to zero
R SurvivalAnalysis SurvFit Surv
updated 9 months ago by ★ 1.4k • written 9 months ago by ▴ 100
0
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0
replies
697
views
Comment: Comment: Keplen Meyer Curve Dropping to zero
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
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1
reply
1.1k
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Comment: Comment: GATK GetPileupSummaries Java heap space
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
1
vote
1
reply
1.8k
views
Comment: Comment: Typical Volcano Plot for DGE
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
5
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8
replies
1.3k
views
6 follow
Convert files made for b37 into hg19 human reference?
GATK Variant-Calling Mutect2
updated 9 months ago by ★ 3.9k • written 9 months ago by ▴ 100
1
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0
replies
1.8k
views
Answer: Answer: Typical Volcano Plot for DGE
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
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1
reply
1.1k
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Comment: Comment: GATK GetPileupSummaries Java heap space
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
7
votes
5
replies
1.1k
views
GATK GetPileupSummaries Java heap space
GATK Variant-Calling GetPileupSummaries
updated 4 months ago by 43k • written 9 months ago by ▴ 100
0
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0
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531
views
GATK GetPileUpSummariesUsage
GATK Variant-Calling Mutect2 GetPileupSummaries
updated 9 months ago by 43k • written 9 months ago by ▴ 100
0
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1
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5.8k
views
Comment: Comment: GATK BaseRecalibrator known-sites vcf file
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
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1
reply
5.8k
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Comment: Comment: GATK BaseRecalibrator known-sites vcf file
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
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0
replies
12k
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Comment: Comment: problems in hg19 and b37 compatibility
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
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0
replies
1.3k
views
Comment: Comment: Convert files made for b37 into hg19 human reference?
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
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1
reply
1.3k
views
Comment: Comment: Convert files made for b37 into hg19 human reference?
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
votes
1
reply
884
views
Does the gene universe for enrichGo need to be a list of gene names?
enrichGo RNA-Seq OverRepresentation ORA clusterProfiler
updated 9 months ago by ★ 2.0k • written 9 months ago by ▴ 100
0
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0
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915
views
Comment: Comment: GATK Mutect2 Input files reference and features have incompatible contigs: No ov
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
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1
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915
views
Comment: Comment: GATK Mutect2 Input files reference and features have incompatible contigs: No ov
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
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2
replies
915
views
Comment: Comment: GATK Mutect2 Input files reference and features have incompatible contigs: No ov
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
1
vote
7
replies
915
views
GATK Mutect2 Input files reference and features have incompatible contigs: No overlapping contigs found.
hg19 Mutect2 GATK Variant-Calling
updated 6 weeks ago by 43k • written 9 months ago by ▴ 100
0
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0
replies
510
views
Comment: Comment: Should sorted bam files when processed have ordered chromossomes?
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
0
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1
reply
510
views
Comment: Comment: Should sorted bam files when processed have ordered chromossomes?
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
5
votes
5
replies
510
views
Should sorted bam files when processed have ordered chromossomes?
BAM GATK MarkDuplicates
updated 9 months ago by 43k • written 9 months ago by ▴ 100
0
votes
0
replies
669
views
Comment: Comment: Filtering unmapped reads from BAM files
9 months ago by Manuel Sokolov Ravasqueira ▴ 100
6
votes
3
replies
568
views
Optimal Over Representation Analysis DE genes foldFC threshold?
ClusterProfiler ORA EnrichGo DGE
updated 9 months ago by 4.2k • written 9 months ago by ▴ 100
57 results • Page 1 of 2
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