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585
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CellTypist Confidence Scores vs SingleR Delta Scores
single-cell singleR celltypeannotation celltypist
12 months ago by Manuel Sokolov Ravasqueira ▴ 110
1
vote
1
reply
701
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Gene Regulatory Network Inference Data Needed
GRN scATAC-SEQ scRNA-SEQ Single-Cell Gene-Regulatory-Networks
updated 13 months ago by 45k • written 13 months ago by ▴ 110
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1.5k
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Comment: Comment: Download files from Experiment Acession
13 months ago by Manuel Sokolov Ravasqueira ▴ 110
1
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0
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1.5k
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Comment: Comment: Download files from Experiment Acession
13 months ago by Manuel Sokolov Ravasqueira ▴ 110
0
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1
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1.5k
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Comment: Comment: Download files from Experiment Acession
13 months ago by Manuel Sokolov Ravasqueira ▴ 110
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6
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1.5k
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Download files from Experiment Acession
BioProject NCBI SRA
13 months ago by Manuel Sokolov Ravasqueira ▴ 110
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0
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519
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Cell Typist Providing different results between iterations
Python Single-Cell CellAnnotation CellTypist
updated 14 months ago by 45k • written 14 months ago by ▴ 110
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0
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628
views
What does ANOVA test over CoxPH model mean?
SurvivalAnalysis CoxPH ANOVA Survival
20 months ago by Manuel Sokolov Ravasqueira ▴ 110
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0
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1.6k
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Comment: Comment: GetPileupSummaries intervals-list with Targeted Sequencing?
21 months ago by Manuel Sokolov Ravasqueira ▴ 110
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1
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1.6k
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Comment: Comment: GetPileupSummaries intervals-list with Targeted Sequencing?
21 months ago by Manuel Sokolov Ravasqueira ▴ 110
0
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1
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1.6k
views
Comment: Comment: GetPileupSummaries intervals-list with Targeted Sequencing?
21 months ago by Manuel Sokolov Ravasqueira ▴ 110
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0
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8.4k
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Comment: Comment: How to create interval list from reference fasta or dict file?
21 months ago by Manuel Sokolov Ravasqueira ▴ 110
2
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6
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1.6k
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GetPileupSummaries intervals-list with Targeted Sequencing?
GetPileUpSummaries GATK Variant-Calling
updated 21 months ago by 45k • written 21 months ago by ▴ 110
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0
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656
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Apply BSQR for Targeted Sequencing
GenomicPipelines GATK variant-calling
21 months ago by Manuel Sokolov Ravasqueira ▴ 110
4
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2
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1.6k
views
Visualization package for Maf Files using Python
Python maftools Visualization MAF
updated 23 months ago by ★ 1.7k • written 23 months ago by ▴ 110
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0
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549
views
Convert from limma voom normalized matrix each gene to high/low
limma-voom RNA-SEQ
updated 24 months ago by 45k • written 24 months ago by ▴ 110
2
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1
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1.3k
views
Consensus Cluster takes normalized gene counts or raw gene counts?
R Gene-Expression ConsensusCluster DGE
updated 2.0 years ago by ★ 3.1k • written 2.0 years ago by ▴ 110
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1
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2.4k
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Comment: Comment: Enricher - Hyper Geometric Test Details
2.1 years ago by Manuel Sokolov Ravasqueira ▴ 110
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1
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2.4k
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Comment: Comment: Enricher - Hyper Geometric Test Details
2.1 years ago by Manuel Sokolov Ravasqueira ▴ 110
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1
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2.4k
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Comment: Comment: Enricher - Hyper Geometric Test Details
2.1 years ago by Manuel Sokolov Ravasqueira ▴ 110
0
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1
reply
2.4k
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Comment: Comment: Enricher - Hyper Geometric Test Details
2.1 years ago by Manuel Sokolov Ravasqueira ▴ 110
6
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9
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2.4k
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Enricher - Hyper Geometric Test Details
Enricher ClusterProfiler DGE ORA
updated 2.1 years ago by 89k • written 2.1 years ago by ▴ 110
1
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0
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1.1k
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Answer: Answer: Over Representation Analysis over one specific pathway
2.1 years ago by Manuel Sokolov Ravasqueira ▴ 110
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0
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1.1k
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Comment: Comment: Over Representation Analysis over one specific pathway
2.1 years ago by Manuel Sokolov Ravasqueira ▴ 110
3
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3
replies
1.1k
views
Over Representation Analysis over one specific pathway
GSEA DGE ORA
2.1 years ago by Manuel Sokolov Ravasqueira ▴ 110
5
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1
reply
1.3k
views
Enricher with Gene Symbols
DGE ClusterProfiler Enrich ORA
updated 2.1 years ago by ★ 3.1k • written 2.1 years ago by ▴ 110
1
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0
replies
565
views
How to define TMB-High/TMB-Low and Gene Expression High/Low?
Voom Limma TMB RNASeq GeneExpression
2.1 years ago by Manuel Sokolov Ravasqueira ▴ 110
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0
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958
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Comment: Comment: Gene set enrichment analysis / Kegg analysis
2.1 years ago by Manuel Sokolov Ravasqueira ▴ 110
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0
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1.2k
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Comment: Comment: What are the reasons to find so few Differentially expressed genes (DEGs)?
2.1 years ago by Manuel Sokolov Ravasqueira ▴ 110
1
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1
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1.7k
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Comment: Comment: LogFc vs t_statistic to estimate over/under expressed genes?
2.1 years ago by Manuel Sokolov Ravasqueira ▴ 110
8
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4
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1.7k
views
LogFc vs t_statistic to estimate over/under expressed genes?
T-Test Limma DGE Voom
updated 2.1 years ago by 89k • written 2.1 years ago by ▴ 110
2
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1
reply
1.1k
views
Maf File Bar Code
GATK Maf vcf
updated 2.1 years ago by ★ 1.3k • written 2.2 years ago by ▴ 110
11
votes
3
replies
1.1k
views
Send BAM files from server to cluster
BAM
updated 2.1 years ago by 89k • written 2.1 years ago by ▴ 110
4
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5
replies
1.6k
views
Keplen Meyer Curve Dropping to zero
R SurvivalAnalysis SurvFit Surv
updated 2.2 years ago by ★ 1.6k • written 2.2 years ago by ▴ 110
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0
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1.6k
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Comment: Comment: Keplen Meyer Curve Dropping to zero
2.2 years ago by Manuel Sokolov Ravasqueira ▴ 110
0
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1
reply
2.0k
views
Comment: Comment: GATK GetPileupSummaries Java heap space
2.2 years ago by Manuel Sokolov Ravasqueira ▴ 110
1
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1
reply
5.9k
views
Comment: Comment: Typical Volcano Plot for DGE
2.2 years ago by Manuel Sokolov Ravasqueira ▴ 110
5
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8
replies
3.1k
views
6 follow
Convert files made for b37 into hg19 human reference?
GATK Variant-Calling Mutect2
updated 2.2 years ago by ★ 4.7k • written 2.2 years ago by ▴ 110
1
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0
replies
5.9k
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Answer: Answer: Typical Volcano Plot for DGE
2.2 years ago by Manuel Sokolov Ravasqueira ▴ 110
0
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1
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2.0k
views
Comment: Comment: GATK GetPileupSummaries Java heap space
2.2 years ago by Manuel Sokolov Ravasqueira ▴ 110
7
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5
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2.0k
views
GATK GetPileupSummaries Java heap space
GATK Variant-Calling GetPileupSummaries
updated 21 months ago by 45k • written 2.2 years ago by ▴ 110
1
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0
replies
1.2k
views
GATK GetPileUpSummariesUsage
GATK Variant-Calling Mutect2 GetPileupSummaries
updated 2.2 years ago by 45k • written 2.2 years ago by ▴ 110
0
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1
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8.8k
views
Comment: Comment: GATK BaseRecalibrator known-sites vcf file
2.2 years ago by Manuel Sokolov Ravasqueira ▴ 110
0
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1
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8.8k
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Comment: Comment: GATK BaseRecalibrator known-sites vcf file
2.2 years ago by Manuel Sokolov Ravasqueira ▴ 110
0
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0
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13k
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Comment: Comment: problems in hg19 and b37 compatibility
2.2 years ago by Manuel Sokolov Ravasqueira ▴ 110
0
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0
replies
3.1k
views
Comment: Comment: Convert files made for b37 into hg19 human reference?
2.2 years ago by Manuel Sokolov Ravasqueira ▴ 110
0
votes
1
reply
3.1k
views
Comment: Comment: Convert files made for b37 into hg19 human reference?
2.2 years ago by Manuel Sokolov Ravasqueira ▴ 110
0
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1
reply
1.7k
views
Does the gene universe for enrichGo need to be a list of gene names?
enrichGo RNA-Seq OverRepresentation ORA clusterProfiler
updated 2.2 years ago by ★ 2.1k • written 2.2 years ago by ▴ 110
0
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0
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1.8k
views
Comment: Comment: GATK Mutect2 Input files reference and features have incompatible contigs: No ov
2.2 years ago by Manuel Sokolov Ravasqueira ▴ 110
0
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1
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1.8k
views
Comment: Comment: GATK Mutect2 Input files reference and features have incompatible contigs: No ov
2.2 years ago by Manuel Sokolov Ravasqueira ▴ 110
64 results • Page 1 of 2
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