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Answer: Answer: Whether the probe intensity of microarray can be used to calculate TPM like the
3.6 years ago by Gordon Smyth ★ 8.3k
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Comment: Comment: Calculate fold change in edgeR with one sample per condition
4.1 years ago by Gordon Smyth ★ 8.3k
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Answer: Answer: Calculate fold change in edgeR with one sample per condition
4.1 years ago by Gordon Smyth ★ 8.3k
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Answer: Answer: How to convert log2 scale RNA-Seq expression data to linear scale data
4.1 years ago by Gordon Smyth ★ 8.3k
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6.9k
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Comment: Comment: How to convert log2 scale RNA-Seq expression data to linear scale data
4.1 years ago by Gordon Smyth ★ 8.3k
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Comment: Comment: How to convert log2 scale RNA-Seq expression data to linear scale data
4.1 years ago by Gordon Smyth ★ 8.3k
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Answer: Answer: Extract log2FC values from volcanoplot() possible?
4.1 years ago by Gordon Smyth ★ 8.3k
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Job: Postdoctoral Scientist in Statistical Bioinformatics, WEHI, Melbourne, Australia
australia
4.1 years ago by Gordon Smyth ★ 8.3k
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Answer: Answer: MD plot for every sample (?!)
4.1 years ago by Gordon Smyth ★ 8.3k
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Comment: Comment: GSE28955 - Agilent-016436 Human miRNA Microarray 1.0
4.1 years ago by Gordon Smyth ★ 8.3k
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Comment: Comment: Why do I get a big log fold change but small mean change in b value when plottin
4.1 years ago by Gordon Smyth ★ 8.3k
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2.5k
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Answer: Answer: Why do I get a big log fold change but small mean change in b value when plottin
4.1 years ago by Gordon Smyth ★ 8.3k
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3.1k
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Comment: Comment: problem with no replicate data analysis
4.1 years ago by Gordon Smyth ★ 8.3k
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3.1k
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Answer: Answer: problem with no replicate data analysis
4.1 years ago by Gordon Smyth ★ 8.3k
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Comment: Comment: featureCounts parameters for RNA-Seq
4.1 years ago by Gordon Smyth ★ 8.3k
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Comment: Comment: featureCounts parameters for RNA-Seq
4.1 years ago by Gordon Smyth ★ 8.3k
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Answer: Answer: Would this laptop be sufficient for small dataset/sequence analysis?
4.1 years ago by Gordon Smyth ★ 8.3k
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2.3k
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Comment: Comment: How to get genes list from goana function in R
4.2 years ago by Gordon Smyth ★ 8.3k
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Comment: Comment: How to get genes list from goana function in R
4.2 years ago by Gordon Smyth ★ 8.3k
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Answer: Answer: How to get genes list from goana function in R
4.2 years ago by Gordon Smyth ★ 8.3k
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Answer: Answer: Raw counts of scRNA-seq
4.2 years ago by Gordon Smyth ★ 8.3k
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3.9k
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Comment: Comment: Differentially gene expression analysis using limma
4.2 years ago by Gordon Smyth ★ 8.3k
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2.7k
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Comment: Comment: Query for limma and DEseq2
4.2 years ago by Gordon Smyth ★ 8.3k
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3.9k
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Comment: Comment: Differentially gene expression analysis using limma
4.2 years ago by Gordon Smyth ★ 8.3k
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3.9k
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Answer: Answer: Differentially gene expression analysis using limma
4.2 years ago by Gordon Smyth ★ 8.3k
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1.5k
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Answer: Answer: Subread-align: Properly-paired versus not properly paired
4.2 years ago by Gordon Smyth ★ 8.3k
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Job: Statistical Bioinformatics Laboratory Head, WEHI, Melbourne, Australia
Australia
updated 2.3 years ago by 45k • written 4.4 years ago by ★ 8.3k
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Answer: Answer: Statistical Bioinformatics Laboratory Head, WEHI, Melbourne, Australia
4.3 years ago by Gordon Smyth ★ 8.3k
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Answer: Answer: Differential Gene Expression Analysis From TMM normalized counts
4.3 years ago by Gordon Smyth ★ 8.3k
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8.3k
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Answer: Answer: TMM - Normalized FPKM values for RNASeq data ?
4.3 years ago by Gordon Smyth ★ 8.3k
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Comment: Comment: output TMM normalized counts with edgeR
4.3 years ago by Gordon Smyth ★ 8.3k
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Answer: Answer: How do you generate TMM normalized counts using EdgeR?
2.6 years ago by Gordon Smyth ★ 8.3k
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4.7k
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Answer: Answer: Converting LogCPM to raw counts for DESEQ2
4.3 years ago by Gordon Smyth ★ 8.3k
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5.3k
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Comment: Comment: Conceptual - Do I need to justify myself if I generate more than three replicate
4.3 years ago by Gordon Smyth ★ 8.3k
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Answer: Answer: DEseq2 AND edgeR
4.4 years ago by Gordon Smyth ★ 8.3k
4
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Answer: Answer: STAR alignment on Windows
4.2 years ago by Gordon Smyth ★ 8.3k
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1.4k
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Comment: Comment: LOOCV on limma results
4.4 years ago by Gordon Smyth ★ 8.3k
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Answer: Answer: Bioinformatics Laboratory Head, WEHI, Melbourne, Australia
4.4 years ago by Gordon Smyth ★ 8.3k
1
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0
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904
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Job: Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
cancer wehi australia
4.4 years ago by Gordon Smyth ★ 8.3k
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1
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2.1k
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Comment: Comment: How to structure my edgeR model to incorporate a temporal variable and 2 categor
4.4 years ago by Gordon Smyth ★ 8.3k
4
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2.1k
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Answer: Answer: How to structure my edgeR model to incorporate a temporal variable and 2 categor
4.4 years ago by Gordon Smyth ★ 8.3k
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2.1k
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Comment: Comment: Understanding why `Design matrix not of full rank. The following coefficients no
4.4 years ago by Gordon Smyth ★ 8.3k
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1.4k
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Answer: Answer: Differentially expression analysis
4.4 years ago by Gordon Smyth ★ 8.3k
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Comment: Comment: Bioinformatics Laboratory Head, WEHI, Melbourne, Australia
4.4 years ago by Gordon Smyth ★ 8.3k
3
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3.4k
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Answer: Answer: Trying to do log2 transformation of my rna seq data
4.4 years ago by Gordon Smyth ★ 8.3k
3
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1
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5.2k
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Answer: Answer: Limma: Extracting differentially expressed genes identified with the global meth
4.5 years ago by Gordon Smyth ★ 8.3k
1
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2.1k
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Answer: A: chi squared assesment of gene expression and batch effect
4.5 years ago by Gordon Smyth ★ 8.3k
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1.3k
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Answer: A: model matrix error message 'unequal columns/rows' when using a conditional varia
4.5 years ago by Gordon Smyth ★ 8.3k
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963
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Comment: C: Error occured in designing a matrix
4.5 years ago by Gordon Smyth ★ 8.3k
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1.1k
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Answer: A: gene expression x phenotype correlation
4.5 years ago by Gordon Smyth ★ 8.3k
577 results • Page 8 of 12
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