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1
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3.8k
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Answer: A: Convert Plink files to UCSC BED files
9.2 years ago by LauferVA 4.8k
0
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0
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2.1k
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Comment: C: Is it possible to get LD statistics keeping haplotype in mind?
9.3 years ago by LauferVA 4.8k
1
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5.8k
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Comment: C: Is it valid to call this an "empirical p-value" ?
9.3 years ago by LauferVA 4.8k
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5.8k
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Comment: C: Is it valid to call this an "empirical p-value" ?
9.3 years ago by LauferVA 4.8k
11
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3
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5.8k
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Is it valid to call this an "empirical p-value" ?
simulation testing p-value permutation testing
updated 9.3 years ago by 105k • written 9.3 years ago by 4.8k
0
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1
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3.2k
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Making a standardized list of conversion of all kgp identifiers to RSids for the NHGRI GWAS catalog
kgp rsid conversion SNP
9.3 years ago by LauferVA 4.8k
1
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0
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2.9k
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Comment: C: Finding SNPs in LD with GWAS hits
9.3 years ago by LauferVA 4.8k
0
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1
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5.0k
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Comment: C: Conditional analysis with duplicate variant IDs in PLINK
9.3 years ago by LauferVA 4.8k
0
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1
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5.0k
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Answer: A: Conditional analysis with duplicate variant IDs in PLINK
9.3 years ago by LauferVA 4.8k
4
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1
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65k
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Answer: A: How to extract specific chromosome from vcf file
9.3 years ago by LauferVA 4.8k
0
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0
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5.0k
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Answer: A: Nucleotide and amino acid identity calculation
9.3 years ago by LauferVA 4.8k
2
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1
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4.4k
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Answer: A: Using VCFtools to find which population codes individuals in a vcf file belong t
9.3 years ago by LauferVA 4.8k
0
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0
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1.5k
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Help finding citation that SNPs whose allele frequency has changed much between ethnicities are more likely to be GWAS index SNPs?
GWAS association index SNP
9.3 years ago by LauferVA 4.8k
0
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1
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7.1k
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Comment: C: Convert from fasta to fastq
9.4 years ago by LauferVA 4.8k
0
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0
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2.4k
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Comment: C: Extracting protein sequence with Matlab
9.4 years ago by LauferVA 4.8k
0
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0
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2.0k
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Comment: C: IMPUTE2 data extraction
9.4 years ago by LauferVA 4.8k
0
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0
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1.9k
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Comment: C: What is a better solution for the comparison of 50-300 VCFs with an aim to find
9.4 years ago by LauferVA 4.8k
0
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1
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2.4k
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Comment: C: Extracting protein sequence with Matlab
9.4 years ago by LauferVA 4.8k
0
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1
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1.9k
views
Comment: C: What is a better solution for the comparison of 50-300 VCFs with an aim to find
9.4 years ago by LauferVA 4.8k
0
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0
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2.9k
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Comment: C: calculating frequency of snps
9.4 years ago by LauferVA 4.8k
0
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0
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5.2k
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Comment: C: Whole exome sequencing data, rare variants and QQ-plots
9.4 years ago by LauferVA 4.8k
0
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0
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5.1k
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Comment: C: Locus Zoom Issuing "No valid markers in VCF file" on a VCF created in Plink 1.9
9.4 years ago by LauferVA 4.8k
1
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0
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5.2k
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Comment: C: Whole exome sequencing data, rare variants and QQ-plots
9.4 years ago by LauferVA 4.8k
0
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0
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3.3k
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Comment: C: Pairwise linkage disequilibrium
9.4 years ago by LauferVA 4.8k
0
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1
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5.1k
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Comment: C: Locus Zoom Issuing "No valid markers in VCF file" on a VCF created in Plink 1.9
9.4 years ago by LauferVA 4.8k
0
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0
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2.4k
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Comment: C: Running 1.5M potentially different generalized linear models depending on distri
9.5 years ago by LauferVA 4.8k
6
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3
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2.4k
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Running 1.5M potentially different generalized linear models depending on distribution of read depth information to study CNV
CNV GLM read depth
updated 9.5 years ago by 12k • written 9.5 years ago by 4.8k
0
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0
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2.2k
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Comment: C: Generalization of the concept of LD to polyallelic variants and / or variants th
9.5 years ago by LauferVA 4.8k
0
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1
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2.2k
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Generalization of the concept of LD to polyallelic variants and / or variants that are within SV and CNV events
linkage disequilibrium LD CNV SV SNV
9.5 years ago by LauferVA 4.8k
1
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0
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1.9k
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What software was used to produce Figure 1 of this manuscript
Figures linkage disequilbrium GWAS
9.6 years ago by LauferVA 4.8k
7
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6
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4.8k
views
how can I get MAF stratified by subpopulation for ASW, or CEU and YRI
genetics MAF subpopulation allele-frequency
updated 3.6 years ago by 45k • written 10.8 years ago by 4.8k
1
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0
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1.8k
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How to prioritize candidate causal variation and isolate independent association signals in a family based study of catfish
GWAS Causal Variant Association QFAM Family
9.6 years ago by LauferVA 4.8k
3
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2
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2.3k
views
Detecting fine population structure such as might confound a rare variant association study
confound rare-variant population GWAS substructure
updated 3.1 years ago by 45k • written 10.2 years ago by 4.8k
0
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0
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1.5k
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Comment: Comment: generating database of SNPs from multiple alignment?
updated 3.3 years ago by 45k • written 9.7 years ago by 4.8k
0
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0
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3.5k
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Comment: C: Obtain sequences to test positive selection using dN/dS statistics?
9.7 years ago by LauferVA 4.8k
0
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0
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3.5k
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Comment: Comment: Obtain sequences to test positive selection using dN/dS statistics?
updated 3.3 years ago by 45k • written 9.7 years ago by 4.8k
0
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1
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3.5k
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Comment: C: Obtain sequences to test positive selection using dN/dS statistics?
9.7 years ago by LauferVA 4.8k
5
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5
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3.5k
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Obtain sequences to test positive selection using dN/dS statistics?
positive-selection evolution dN-dS
updated 3.3 years ago by 45k • written 9.7 years ago by 4.8k
0
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0
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5.1k
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Answer: A: Does anyone know any specific 1000 genomes WGS data that is around 30x coverage?
9.8 years ago by LauferVA 4.8k
3
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1
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3.8k
views
PAMLX yn00 does not issue error message but prints empty files when asked for dN/dS statistics
dNdS PAML
updated 3.3 years ago by 45k • written 9.8 years ago by 4.8k
4
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1
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2.6k
views
Formulating the best imputation strategy for multiple GWAS chips in an admixed population
GWAS imputation admixture meta analysis
10.0 years ago by LauferVA 4.8k
6
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8
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3.9k
views
List of causal variants for autoimmune diseases
autoimmune SNP GWAS genetics
updated 2.9 years ago by 45k • written 10.6 years ago by 4.8k
0
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2
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2.5k
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Finding public ChIP-seq data for various tissue types
ChIP-Seq
updated 2.6 years ago by 45k • written 10.1 years ago by 4.8k
0
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0
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2.3k
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Comment: C: Detecting fine population structure such as might confound a rare variant associ
10.2 years ago by LauferVA 4.8k
1
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1
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3.3k
views
Comment: C: how i can extract needed gene list (txt) from a bed file
10.2 years ago by LauferVA 4.8k
0
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0
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5.3k
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Answer: Answer: What is a bad lowest-CV value for Admixture?
updated 3.1 years ago by 45k • written 10.2 years ago by 4.8k
1
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0
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3.1k
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Comment: Comment: BigWig to Circos format
updated 3.6 years ago by 45k • written 10.2 years ago by 4.8k
0
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0
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3.9k
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Comment: Comment: Best implementation of negative binomial association test for GWAS data?
updated 3.6 years ago by 45k • written 10.2 years ago by 4.8k
0
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0
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3.5k
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Comment: Comment: How else can one quantify a DNA sequence besides GC-content and length?
updated 3.1 years ago by 45k • written 10.2 years ago by 4.8k
0
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1
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3.7k
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Comment: Comment: hypergeometric distribution for proximal gene enrichment
updated 3.1 years ago by 45k • written 10.2 years ago by 4.8k
793 results • Page 15 of 16
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