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3
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2
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2.3k
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Resources to understand regression models for count data
regression statistics RNA-seq
updated 2.4 years ago by 45k • written 9.5 years ago by ★ 3.5k
0
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0
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3.5k
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Comment: C: Extracting paired unmapped reads into fastq gives empty file
9.5 years ago by James Ashmore ★ 3.5k
0
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1
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3.5k
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Comment: C: Extracting paired unmapped reads into fastq gives empty file
9.5 years ago by James Ashmore ★ 3.5k
0
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1
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3.5k
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Comment: C: Extracting paired unmapped reads into fastq gives empty file
9.5 years ago by James Ashmore ★ 3.5k
5
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1
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7.0k
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Answer: A: retrieve 1000 bp upstream sequences
9.5 years ago by James Ashmore ★ 3.5k
2
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0
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7.0k
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Comment: C: retrieve 100 bp upstream sequences
9.5 years ago by James Ashmore ★ 3.5k
1
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0
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2.5k
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Answer: A: Overlap chipseq regions with repetative regions
9.5 years ago by James Ashmore ★ 3.5k
1
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1
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2.9k
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Answer: A: bedtools, linux, rnaseq
9.5 years ago by James Ashmore ★ 3.5k
0
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1
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9.9k
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Comment: C: Error Cutadapt: FASTQ file is expected to start with '@
9.5 years ago by James Ashmore ★ 3.5k
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0
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2.6k
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Answer: A: eliminate redundant lines in perl
9.5 years ago by James Ashmore ★ 3.5k
4
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0
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3.6k
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Answer: A: Imprresive demonstration about bioinformatics analysis.
9.6 years ago by James Ashmore ★ 3.5k
2
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1
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4.8k
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Answer: A: Python Programming (Suggestions are needed)
9.6 years ago by James Ashmore ★ 3.5k
3
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5
replies
8.8k
views
Visualising the number of overlapping peaks in ChIP-seq studies
ChIP-Seq
updated 3.2 years ago by 45k • written 9.6 years ago by ★ 3.5k
0
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1
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4.9k
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Comment: C: genomeCoverageBed for paired end reads
9.7 years ago by James Ashmore ★ 3.5k
1
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0
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7.6k
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Answer: A: ATACseq alignment issues
9.7 years ago by James Ashmore ★ 3.5k
0
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1
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3.9k
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Answer: A: Chip-Seq - How to do Quantile normalization on bam files?
9.8 years ago by James Ashmore ★ 3.5k
4
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1
reply
1.8k
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Answer: A: Python syntax help (metaseq)
9.9 years ago by James Ashmore ★ 3.5k
0
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0
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2.7k
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Comment: C: Calculate the number of paired-end reads their middle size is greater than # KB
9.9 years ago by James Ashmore ★ 3.5k
2
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1
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2.7k
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Answer: Answer: Calculate the number of paired-end reads their middle size is greater than # KB
updated 3.2 years ago by 45k • written 9.9 years ago by ★ 3.5k
9
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1
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6.6k
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Why does MACS2 report multiple records for the same peak region?
ChIP-Seq macs macs2
updated 3.1 years ago by 45k • written 9.9 years ago by ★ 3.5k
1
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1
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9.3k
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Comment: C: Using Biopython to present ORF lengths by identifier
9.9 years ago by James Ashmore ★ 3.5k
1
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0
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2.4k
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Answer: A: Gene search with known start and end site
9.9 years ago by James Ashmore ★ 3.5k
0
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1
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18k
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Answer: A: How to generate BedGraph from BedTools Coverage?
9.9 years ago by James Ashmore ★ 3.5k
4
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1
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6.5k
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Answer: Answer: problem with some argument in cutadapt
updated 3.0 years ago by 45k • written 10.0 years ago by ★ 3.5k
4
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0
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6.2k
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Answer: A: GC content and Kmer
10.0 years ago by James Ashmore ★ 3.5k
0
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2
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5.5k
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Answer: A: It seems that 'fastuniq' does not support fq.gz files. How to solve this except
10.0 years ago by James Ashmore ★ 3.5k
4
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3
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4.0k
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Answer: A: Wrapping protein sequence output using python
10.0 years ago by James Ashmore ★ 3.5k
1
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0
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5.6k
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Comment: Comment: coverage bed error but produces output file
updated 3.0 years ago by 45k • written 10.0 years ago by ★ 3.5k
1
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1
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5.6k
views
Answer: Answer: coverage bed error but produces output file
updated 3.0 years ago by 45k • written 10.0 years ago by ★ 3.5k
0
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1
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8.1k
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Answer: A: biopython: fetching a fasta sequence from coordinates
10.0 years ago by James Ashmore ★ 3.5k
3
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0
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4.3k
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Answer: Answer: SRA to fastq
updated 3.0 years ago by 45k • written 10.0 years ago by ★ 3.5k
0
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0
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17k
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Comment: C: Can't convert paired end BAM to bed using bedtools
10.0 years ago by James Ashmore ★ 3.5k
0
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0
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5.3k
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Comment: C: Extract coordinates of adjacent genes for each provided intergenic regions from
10.0 years ago by James Ashmore ★ 3.5k
1
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1
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2.5k
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Download genome annotations from UCSC's MySQL database
UCSC MySQL BED
updated 10.0 years ago by 166k • written 10.0 years ago by ★ 3.5k
1
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0
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5.4k
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Comment: C: why is my txt file empty ?
10.0 years ago by James Ashmore ★ 3.5k
1
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1
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5.4k
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Answer: A: why my txt file is empty????
10.0 years ago by James Ashmore ★ 3.5k
2
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0
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4.2k
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Answer: A: Why is my fastq data on two files if I am supposed to have single end reads?
10.0 years ago by James Ashmore ★ 3.5k
0
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1
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6.8k
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Answer: Answer: Annotate ouput file from Deseq2
updated 3.0 years ago by 45k • written 10.0 years ago by ★ 3.5k
0
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1
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17k
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Comment: C: Can't convert paired end BAM to bed using bedtools
10.0 years ago by James Ashmore ★ 3.5k
0
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2
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17k
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Comment: C: Can't convert paired end BAM to bed using bedtools
10.0 years ago by James Ashmore ★ 3.5k
0
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2
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4.2k
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Comment: C: error when concantenating eggNog hmmer file
10.0 years ago by James Ashmore ★ 3.5k
3
votes
2
replies
2.7k
views
Splitting even length BED records by an even number of base-pairs produces a single base-pair window
bed bedtools
updated 3.0 years ago by 45k • written 10.0 years ago by ★ 3.5k
2
votes
2
replies
7.8k
views
Answer: Answer: compare and search a list of ids in two text file
updated 3.6 years ago by 45k • written 10.0 years ago by ★ 3.5k
0
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0
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7.8k
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Comment: C: compare and search a list of ids in two text file
10.0 years ago by James Ashmore ★ 3.5k
0
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1
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4.2k
views
Comment: C: error when concantenating eggNog hmmer file
10.0 years ago by James Ashmore ★ 3.5k
0
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2
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4.2k
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Comment: C: error when concantenating eggNog hmmer file
10.0 years ago by James Ashmore ★ 3.5k
0
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1
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4.2k
views
Answer: A: error when concantenating eggNog hmmer file
10.0 years ago by James Ashmore ★ 3.5k
0
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0
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2.5k
views
Answer: Answer: merging sequences from bedtools options -name, -tab into one file
updated 3.0 years ago by 45k • written 10.0 years ago by ★ 3.5k
0
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0
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2.9k
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Answer: A: FastQC quality control graphics for publication?
10.0 years ago by James Ashmore ★ 3.5k
2
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0
replies
10.0k
views
Answer: A: PCA plot Fig software
10.0 years ago by James Ashmore ★ 3.5k
290 results • Page 5 of 6
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