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Comment: Comment: how to identify artificially fused contigs during assembly by using blast?
updated 2.9 years ago by 45k • written 10.3 years ago by ★ 1.9k
2
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3
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2.7k
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how to identify artificially fused contigs during assembly by using blast?
Assembly alignment RNA-Seq blast
updated 2.9 years ago by 45k • written 10.3 years ago by ★ 1.9k
3
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4
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3.4k
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Getting species name after doing blastx?
blast RNA-Seq sequencing alignment
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
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3.4k
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Comment: Comment: Getting species name after doing blastx?
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
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0
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6.2k
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Comment: C: Fasta sequence replacement based on header name
10.4 years ago by seta ★ 1.9k
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6.2k
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Comment: C: Fasta sequence replacement based on header name
10.4 years ago by seta ★ 1.9k
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6.2k
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Comment: C: Fasta sequence replacement based on header name
10.4 years ago by seta ★ 1.9k
8
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26
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6.2k
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Fasta sequence replacement based on header name
alignment Assembly sequencing RNA-Seq
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
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0
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1.8k
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Using generated transcriptome assembly by two assemblers
RNA-Seq Assembly alignment sequencing
10.4 years ago by seta ★ 1.9k
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1
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6.2k
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Answer: A: Fasta sequence replacement based on header name
10.4 years ago by seta ★ 1.9k
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0
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6.2k
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Comment: Comment: Fasta sequence replacement based on header name
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
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6.2k
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Comment: Comment: Fasta sequence replacement based on header name
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
0
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1
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6.2k
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Comment: Comment: Fasta sequence replacement based on header name
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
0
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1
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6.2k
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Comment: C: Fasta sequence replacement based on header name
10.4 years ago by seta ★ 1.9k
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0
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6.2k
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Comment: Comment: Fasta sequence replacement based on header name
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
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0
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6.2k
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Comment: C: Fasta sequence replacement based on header name
10.4 years ago by seta ★ 1.9k
0
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1
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6.2k
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Comment: C: Fasta sequence replacement based on header name
10.4 years ago by seta ★ 1.9k
0
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0
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2.2k
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Comment: Comment: Combination of two assemblies and get desired contigs
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
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4
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2.2k
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Combination of two assemblies and get desired contigs
alignment Assembly sequencing RNA-Seq
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
0
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0
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2.2k
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Comment: C: Combination of two assemblies and get desired contigs
10.4 years ago by seta ★ 1.9k
13
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7
replies
16k
views
6 follow
How to get length of selected contigs within a fasta file generated by transcriptome assembly?
Assembly alignment RNA-Seq sequencing
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
0
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0
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16k
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Comment: C: How to get length of selected contigs within a fasta file generated by transcrip
10.4 years ago by seta ★ 1.9k
0
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0
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14k
views
Comment: C: How to remove poly T in RNA-sequencing data
10.4 years ago by seta ★ 1.9k
0
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0
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1.6k
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why there is difference in the number of refseq protein sequences in NCBI?
blast alignment sequence
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
0
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0
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4.3k
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Comment: C: Is there any script to select longest ORF instead longest transcript from all as
10.4 years ago by seta ★ 1.9k
0
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0
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5.9k
views
Comment: C: Error during running the first step of Trinity?
10.4 years ago by seta ★ 1.9k
0
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1
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5.9k
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Comment: Comment: Error during running the first step of Trinity?
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
0
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0
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12k
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Comment: C: FASTA sequence extraction using list of sequence name that are not identical wit
10.4 years ago by seta ★ 1.9k
5
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18
replies
12k
views
7 follow
FASTA sequence extraction using list of sequence name that are not identical with the headers?
Assembly blast RNA-Seq sequencing
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
0
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1
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12k
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Comment: C: FASTA sequence extraction using list of sequence name that are not identical wit
10.4 years ago by seta ★ 1.9k
0
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1
reply
12k
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Comment: C: FASTA sequence extraction using list of sequence name that are not identical wit
10.4 years ago by seta ★ 1.9k
0
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1
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5.9k
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Comment: C: Error during running the first step of Trinity?
10.4 years ago by seta ★ 1.9k
0
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0
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5.9k
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Comment: C: Error during running the first step of Trinity?
10.4 years ago by seta ★ 1.9k
0
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2
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5.9k
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Comment: Comment: Error during running the first step of Trinity?
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
0
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15
replies
5.9k
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Error during running the first step of Trinity?
Assembly alignment RNA-Seq sequencing
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
0
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1
reply
5.9k
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Comment: C: Error during running the first step of Trinity?
10.4 years ago by seta ★ 1.9k
0
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0
replies
12k
views
Comment: C: FASTA sequence extraction using list of sequence name that are not identical wit
10.4 years ago by seta ★ 1.9k
0
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1
reply
5.9k
views
Comment: C: Error during running the first step of Trinity?
10.4 years ago by seta ★ 1.9k
0
votes
1
reply
12k
views
Comment: C: FASTA sequence extraction using list of sequence name that are not identical wit
10.4 years ago by seta ★ 1.9k
0
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0
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12k
views
Comment: C: FASTA sequence extraction using list of sequence name that are not identical wit
10.4 years ago by seta ★ 1.9k
0
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0
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3.0k
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Comment: Comment: Trinity Error with the the flag of --run_as_paired
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
2
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2
replies
3.0k
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Trinity Error with the the flag of --run_as_paired
Assembly RNA-Seq sequencing
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
0
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0
replies
2.2k
views
Comment: Comment: Which taxid is a right taxid for downloading GI list and making blast database u
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
0
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2
replies
2.2k
views
Which taxid is a right taxid for downloading GI list and making blast database using it
blast sequencing alignment RNA-Seq
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
0
votes
1
reply
3.4k
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Getting warning during tblastn
blast sequencing genome alignment
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
0
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1
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9.8k
views
Comment: Comment: How to remove some fasta sequences by header information from a large fasta file
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
10
votes
4
replies
9.8k
views
How to remove some fasta sequences by header information from a large fasta file, any command and script please?
alignment RNA-Seq blast next-gen
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 1.9k
0
votes
0
replies
2.4k
views
How compare two de novo assembled transcriptomes of the same sample with different sequencing depth?
Assembly blast RNA-Seq alignment
updated 2.8 years ago by 45k • written 10.4 years ago by ★ 1.9k
0
votes
0
replies
2.1k
views
How efficiently to use information of two de novo assembled transcriptome for further analysis?
Assembly RNA-Seq next-gen-sequencing
updated 2.8 years ago by 45k • written 10.5 years ago by ★ 1.9k
0
votes
0
replies
2.1k
views
Is there a way to separate full-length contigs of a assembled transcriptome from other contigs?
Assembly alignment RNA-Seq blast
updated 2.8 years ago by 45k • written 10.4 years ago by ★ 1.9k
868 results • Page 15 of 18
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