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4
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5
replies
346
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Clustering with other data type than scRNA-seq using Seurat
countmatrix scrna-seq methylation seurat
updated 1 day ago by ★ 30k • written 2 days ago by ▴ 20
0
votes
1
reply
347
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Comment: Comment: Clustering with other data type than scRNA-seq using Seurat
1 day ago by npont ▴ 20
0
votes
1
reply
6.0k
views
DotPlot / VlnPlot Seurat
scrna-seq significance-testing test seurat
updated 6 weeks ago by 6.5k • written 6 weeks ago by ▴ 20
0
votes
1
reply
8.9k
views
Comment: Comment: Statistical test of difference between two conditions and account for the batch
6 weeks ago by npont ▴ 20
0
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1
reply
8.9k
views
Comment: Comment: Statistical test of difference between two conditions and account for the batch
6 weeks ago by npont ▴ 20
0
votes
5
replies
8.9k
views
Statistical test of difference between two conditions and account for the batch
significance-testing test seurat scrna-seq batch
updated 6 weeks ago by 89k • written 7 weeks ago by ▴ 20
0
votes
1
reply
533
views
Interactive UMAP scanpy
UMAP scanpy interactive
updated 4 months ago by 3.4k • written 4 months ago by ▴ 20
7
votes
3
replies
880
views
custom BED to UCSC genome browser
browser ucsc ucsc-genome-browser genome methylation bed
4 months ago by npont ▴ 20
0
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0
replies
880
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Answer: Answer: custom BED to UCSC genome browser
4 months ago by npont ▴ 20
0
votes
0
replies
700
views
Comment: Comment: Trajectory Analysis scRNA-seq with one cell type and two developmental stages
4 months ago by npont ▴ 20
0
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1
reply
700
views
Comment: Comment: Trajectory Analysis scRNA-seq with one cell type and two developmental stages
4 months ago by npont ▴ 20
0
votes
4
replies
700
views
Trajectory Analysis scRNA-seq with one cell type and two developmental stages
cellrank palantir pseudotime-trajectory-analysis scrna-seq trajectory-analysis
4 months ago by npont ▴ 20
0
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0
replies
770
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Comment: Comment: How to run trajectory analysis with only one cell type using palantir?
4 months ago by npont ▴ 20
0
votes
12
replies
2.0k
views
STAR alignment not detecting some transcripts / custom reference
star bwa rna-seq alignment scrna-seq
updated 4 months ago by ★ 1.7k • written 5 months ago by ▴ 20
0
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2
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2.0k
views
Comment: Comment: STAR alignment not detecting some transcripts / custom reference
updated 4 months ago by 154k • written 5 months ago by ▴ 20
0
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0
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2.0k
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Comment: Comment: STAR alignment not detecting some transcripts / custom reference
5 months ago by npont ▴ 20
0
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1
reply
2.0k
views
Comment: Comment: STAR alignment not detecting some transcripts / custom reference
5 months ago by npont ▴ 20
0
votes
2
replies
2.0k
views
Comment: Comment: STAR alignment not detecting some transcripts / custom reference
updated 5 months ago by 154k • written 5 months ago by ▴ 20
3
votes
2
replies
737
views
Impact of the number of PCs on the clustering in scRNA seq
clustering pca scrna-seq
updated 7 months ago by ★ 1.7k • written 7 months ago by ▴ 20
0
votes
0
replies
530
views
cytAssist manual alignment failing for visium HD and spaceranger count
spatial-transcriptomics visiumhd space-ranger
updated 7 months ago by 154k • written 7 months ago by ▴ 20
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