Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
1.5k
views
Comment: Comment: Extracting nucleotide gene sequence as a single fasta from whole genome data wit
6 months ago by Pei ▴ 240
0
votes
1
reply
1.5k
views
Answer: Answer: Extracting nucleotide gene sequence as a single fasta from whole genome data wit
6 months ago by Pei ▴ 240
1
vote
0
replies
664
views
Tutorial: Fix the "incompatible matrix dimensions" issue in running harmony
Harmony RNA-seq single-cell
updated 6 months ago by 45k • written 6 months ago by ▴ 240
0
votes
0
replies
2.0k
views
Comment: Comment: Differential expressed genes - much more DE genes for one factor in the additive
9 months ago by Pei ▴ 240
5
votes
7
replies
2.0k
views
Differential expressed genes - much more DE genes for one factor in the additive model than the interaction model . What may be the reason?
DESeq2
9 months ago by Pei ▴ 240
0
votes
0
replies
2.0k
views
Comment: Comment: Differential expressed genes - much more DE genes for one factor in the additive
9 months ago by Pei ▴ 240
0
votes
0
replies
2.0k
views
Comment: Comment: Differential expressed genes - much more DE genes for one factor in the additive
9 months ago by Pei ▴ 240
4
votes
4
replies
1.1k
views
No mouseOver effect in my track hub on UCSC genome browser
UCSC-genome-browser
updated 10 months ago by 45k • written 10 months ago by ▴ 240
1
vote
0
replies
1.1k
views
Answer: Answer: No mouseOver effect in my track hub on UCSC genome browser
10 months ago by Pei ▴ 240
1
vote
1
reply
1.1k
views
Comment: Comment: No mouseOver effect in my track hub on UCSC genome browser
10 months ago by Pei ▴ 240
2
votes
1
reply
1.1k
views
Answer: Answer: No mouseOver effect in my track hub on UCSC genome browser
updated 10 months ago by 152k • written 10 months ago by ▴ 240
0
votes
1
reply
662
views
bamCoverage - how BPM normalization was done?
bamcoverage chip-seq deeptools
10 months ago by Pei ▴ 240
0
votes
0
replies
662
views
Answer: Answer: bamCoverage - how BPM normalization was done?
10 months ago by Pei ▴ 240
0
votes
1
reply
966
views
Comment: Comment: Any recommended way to share ChIP track to collaborator through UCSC browser wit
10 months ago by Pei ▴ 240
0
votes
1
reply
966
views
Comment: Comment: Any recommended way to share ChIP track to collaborator through UCSC browser wit
10 months ago by Pei ▴ 240
3
votes
5
replies
966
views
Any recommended way to share ChIP track to collaborator through UCSC browser without using local FTP?
ChIP-Seq UCSC-genome-browser
10 months ago by Pei ▴ 240
1
vote
0
replies
780
views
Comment: Comment: Any recommended way to view scRNAseq results in an interactive format?
11 months ago by Pei ▴ 240
4
votes
3
replies
780
views
Any recommended way to view scRNAseq results in an interactive format?
RNA-seq single-cell
11 months ago by Pei ▴ 240
0
votes
0
replies
600
views
MACS2 parameters slocal and llocal - how are they related to open chromatin?
MACS2 ChIP-Seq
22 months ago by Pei ▴ 240
1
vote
0
replies
2.8k
views
Answer: Answer: Differential Gene Expression analysis in Bulk RNA Seq - using Count Matrix as in
22 months ago by Pei ▴ 240
0
votes
0
replies
759
views
Answer: Answer: Inferring undisclosed 5mer in proprietary SMARTer oligo sequence
22 months ago by Pei ▴ 240
0
votes
1
reply
1.2k
views
Answer: Answer: Whole transcriptome analysis nominated primarily miRNA-related pathways. Advice?
23 months ago by Pei ▴ 240
2
votes
1
reply
1.2k
views
Answer: Answer: Whole transcriptome analysis nominated primarily miRNA-related pathways. Advice?
23 months ago by Pei ▴ 240
0
votes
1
reply
2.3k
views
Comment: Comment: search for intron conservancy across species
23 months ago by Pei ▴ 240
0
votes
1
reply
2.3k
views
Answer: Answer: search for intron conservancy across species
23 months ago by Pei ▴ 240
0
votes
0
replies
776
views
Annotation of ATAC-seq peak - distal intergenic regions as enhancers
annotation peak ATAC-seq
23 months ago by Pei ▴ 240
0
votes
0
replies
876
views
Comment: Comment: many more ChIP-seq peaks called in 1 condition than the other
23 months ago by Pei ▴ 240
3
votes
2
replies
876
views
many more ChIP-seq peaks called in 1 condition than the other
MACS2 ChIP-Seq
updated 23 months ago by ★ 1.5k • written 23 months ago by ▴ 240
0
votes
0
replies
2.1k
views
Comment: Comment: Are adapter sequences trimmed from ONLY the 3' ends of reads
3.5 years ago by Pei ▴ 240
4
votes
3
replies
2.1k
views
Are adapter sequences trimmed from ONLY the 3' ends of reads
RNA-SEQ
3.5 years ago by Pei ▴ 240
1
vote
3
replies
3.2k
views
file size of pair-end sequencing fastq
RNA-SEQ
3.6 years ago by Pei ▴ 240
0
votes
0
replies
3.2k
views
Comment: Comment: file size of pair-end sequencing fastq
3.6 years ago by Pei ▴ 240
0
votes
0
replies
3.2k
views
Comment: Comment: file size of pair-end sequencing fastq
3.6 years ago by Pei ▴ 240
0
votes
0
replies
12k
views
Comment: Comment: how to determine a fastq is phred+33 or phred+64
3.6 years ago by Pei ▴ 240
0
votes
0
replies
12k
views
Comment: Comment: how to determine a fastq is phred+33 or phred+64
3.6 years ago by Pei ▴ 240
3
votes
4
replies
12k
views
how to determine a fastq is phred+33 or phred+64
RNA-seq phred33 phred64
3.6 years ago by Pei ▴ 240
1
vote
0
replies
1.4k
views
STAR genomeSAindexNbases
RNA-seq STAR mapping
3.6 years ago by Pei ▴ 240
0
votes
0
replies
4.1k
views
Answer: A: Mapping left_kept_reads.m2g_um to genome FAILED running Tophat2/Bowtie2
updated 5.5 years ago by 45k • written 9.4 years ago by ▴ 240
0
votes
1
reply
5.1k
views
Comment: C: Should I filter my reads before running bedtools multicov ?
updated 5.6 years ago by 45k • written 9.6 years ago by ▴ 240
5
votes
7
replies
5.1k
views
Should I filter my reads before running bedtools multicov ?
RNA-Seq
updated 2.8 years ago by 45k • written 9.6 years ago by ▴ 240
4
votes
3
replies
3.2k
views
how to improve multiple sequence alignment by removing outlier sequence ?
alignment
updated 6.1 years ago by 20 • written 8.9 years ago by ▴ 240
1
vote
3
replies
1.5k
views
What tool can be used to predct regulatory element within an input sequence ?
sequence
updated 6.3 years ago by ▴ 370 • written 6.3 years ago by ▴ 240
0
votes
0
replies
1.5k
views
Comment: C: What tool can be used to predct regulatory element within an input sequence ?
6.3 years ago by Pei ▴ 240
5
votes
2
replies
7.5k
views
tophat, the parameter "Expected inner distance between mate pairs"?
tophat
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 240
0
votes
1
reply
2.1k
views
Comment: C: tophat: the Searching for junctions via segment mapping was skipped.
8.9 years ago by Pei ▴ 240
0
votes
2
replies
2.1k
views
Comment: A: tophat: the Searching for junctions via segment mapping was skipped.
updated 8.9 years ago by 152k • written 8.9 years ago by ▴ 240
0
votes
6
replies
2.1k
views
tophat: the Searching for junctions via segment mapping was skipped.
rna-seq
8.9 years ago by Pei ▴ 240
1
vote
2
replies
3.4k
views
CLIP-seq data process, start from sra file
CLIP
updated 3.3 years ago by 45k • written 10.5 years ago by ▴ 240
1
vote
1
reply
2.6k
views
align RNA-seq reads to annotated CDS
RNA-Seq
9.1 years ago by Pei ▴ 240
0
votes
1
reply
2.4k
views
Comment: C: a protein failed to be aligned to genome by tblastn
9.1 years ago by Pei ▴ 240
88 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6