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14
votes
12
replies
8.7k
views
11 follow
Find Genes That Correlate To A Given Gene (Database Mining, Not Data Analysis)
gene data
written 14.5 years ago by ▴ 580
49
votes
11
replies
25k
views
11 follow
Bed File With Introns Only
bed intron ucsc browser
updated 3.5 years ago by ▴ 110 • written 13.9 years ago by ▴ 580
9
votes
12
replies
12k
views
Ensembl GTF format: isn't the tag "transcript_id" mandatory?
annotation RNA-Seq GTF GFF ensembl
updated 2.6 years ago by 45k • written 10.4 years ago by ▴ 580
10
votes
8
replies
4.9k
views
7 follow
"X" and "=" CIGAR symbols
alignment
updated 3.0 years ago by 45k • written 10.0 years ago by ▴ 580
12
votes
4
replies
4.0k
views
Go Enrichment Rnaseq: Nothing! (Goseq)
enrichment rna
updated 10.1 years ago by 20 • written 14.1 years ago by ▴ 580
16
votes
2
replies
5.9k
views
definition of chimeric vs multiple-mapping (SAM)
alignment sequencing
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 580
0
votes
0
replies
13k
views
Comment: C: SAM flag and NH tag
10.1 years ago by Pfs ▴ 580
0
votes
1
reply
13k
views
Comment: C: SAM flag and NH tag
10.1 years ago by Pfs ▴ 580
0
votes
0
replies
13k
views
Comment: C: SAM flag and NH tag
10.1 years ago by Pfs ▴ 580
1
vote
6
replies
13k
views
SAM flag and NH tag
RNA-Seq SAM
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 580
4
votes
2
replies
3.1k
views
SAM flags for strand-specific protocols
RNA-Seq SAM
updated 2.9 years ago by 45k • written 10.2 years ago by ▴ 580
1
vote
2
replies
6.1k
views
counting reads with featureCounts - uniquely assign reads to transcripts
RNA-Seq counting reads
updated 4.5 years ago by 45k • written 10.2 years ago by ▴ 580
0
votes
0
replies
8.2k
views
Comment: Comment: Find mates between all alignments in a SAM file
updated 2.8 years ago by 45k • written 10.2 years ago by ▴ 580
0
votes
0
replies
8.2k
views
Comment: Comment: Find mates between all alignments in a SAM file
updated 2.8 years ago by 45k • written 10.2 years ago by ▴ 580
3
votes
4
replies
8.2k
views
Find mates between all alignments in a SAM file
RNASeq SAM
updated 2.8 years ago by 45k • written 10.2 years ago by ▴ 580
1
vote
3
replies
2.6k
views
Annotation file formats
genome
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 580
0
votes
1
reply
2.5k
views
Enzyme cleavage rules and PeptideCutter at ExPasy
protein sequence
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 580
1
vote
0
replies
2.0k
views
Counting features - the example in vignette for summarizeOverlap and HTseq
RNA-Seq
updated 2.6 years ago by 45k • written 10.4 years ago by ▴ 580
0
votes
1
reply
12k
views
Comment: Comment: Ensembl GTF format: isn't the tag "transcript_id" mandatory?
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 580
6
votes
6
replies
6.4k
views
6 follow
Very Large Fpkm Values For Some Transcripts: Artifacts?
fpkm rna
updated 11.8 years ago by 20 • written 13.7 years ago by ▴ 580
8
votes
1
reply
6.8k
views
Insert Size Selection In Rnaseq
rna selection
updated 12.1 years ago by 20 • written 14.3 years ago by ▴ 580
9
votes
2
replies
3.9k
views
Differentially Expressed Genes In Highly Correlated Samples?
correlation gene rna
updated 13.5 years ago by 16k • written 13.8 years ago by ▴ 580
2
votes
4
replies
3.1k
views
Basic Bioinformatics Analysis Of Shrna
updated 13.5 years ago by 10k • written 13.9 years ago by ▴ 580
28
votes
24
replies
12k
views
12 follow
Microarray Data Without Replicates. Any Hope To Get Something Out Of It?
microarray replicates
updated 13.9 years ago by ▴ 220 • written 13.9 years ago by ▴ 580
0
votes
0
replies
25k
views
Comment: C: Bed File With Introns Only
13.9 years ago by Pfs ▴ 580
0
votes
0
replies
3.1k
views
Comment: C: Basic Bioinformatics Analysis Of Shrna
13.9 years ago by Pfs ▴ 580
5
votes
2
replies
6.5k
views
Coverage Of Rnaseq: Exonic, Intronic And Intergenic
coverage rna intron
updated 14.2 years ago by 24k • written 14.4 years ago by ▴ 580
3
votes
4
replies
3.5k
views
What Is The Expected Distribution Of The Distance Between Aligned Paired-End Reads?
rna mitochondria paired distance
updated 14.4 years ago by 22k • written 14.4 years ago by ▴ 580
13
votes
3
replies
2.5k
views
How Much Rnaseq Data Do You "Throw" Away?
rna
updated 14.5 years ago by 11k • written 14.5 years ago by ▴ 580
1
vote
2
replies
11k
views
Answer: A: Help Me Understand Why So Many Reads Do Not Align!
14.5 years ago by Pfs ▴ 580
0
votes
0
replies
11k
views
Comment: C: Help Me Understand Why So Many Reads Do Not Align!
14.5 years ago by Pfs ▴ 580
0
votes
0
replies
11k
views
Comment: C: Help Me Understand Why So Many Reads Do Not Align!
14.5 years ago by Pfs ▴ 580
0
votes
0
replies
11k
views
Comment: C: Help Me Understand Why So Many Reads Do Not Align!
14.5 years ago by Pfs ▴ 580
5
votes
3
replies
6.0k
views
Tophat: Mapped Vs. Aligned
tophat alignment mapping read
updated 14.5 years ago by 10k • written 14.5 years ago by ▴ 580
0
votes
1
reply
6.0k
views
Answer: A: Tophat: Mapped Vs. Aligned
14.5 years ago by Pfs ▴ 580
35 results • Page 1 of 1
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