Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
896
views
How to create Survival Formula for Phenotype Data?
survival
5.3 years ago by dec986 ▴ 380
0
votes
0
replies
2.5k
views
Comment: C: bcftools cannot switch alt and ref alleles, IDs missing
5.6 years ago by dec986 ▴ 380
0
votes
1
reply
2.5k
views
Comment: C: bcftools cannot switch alt and ref alleles, IDs missing
5.6 years ago by dec986 ▴ 380
0
votes
4
replies
2.5k
views
bcftools cannot switch alt and ref alleles, IDs missing
bcftools vcf
5.6 years ago by dec986 ▴ 380
0
votes
0
replies
893
views
break_blocks & GATK switch REF & ALT alleles
vcf gatk
5.7 years ago by dec986 ▴ 380
0
votes
1
reply
1.8k
views
Break_blocks conversion of gvcf -> vcf
genome vcf
5.7 years ago by dec986 ▴ 380
6
votes
14
replies
3.7k
views
Alignment with STAR produces unique bam files, but identical output from bedtools multicov
bedtools STAR samtools
updated 5.7 years ago by 20 • written 9.4 years ago by ▴ 380
0
votes
1
reply
18k
views
Comment: C: Building Dict File for GATK
5.7 years ago by dec986 ▴ 380
1
vote
0
replies
1.6k
views
Comment: C: Break_blocks conversion of gvcf -> vcf
5.7 years ago by dec986 ▴ 380
0
votes
1
reply
1.6k
views
Comment: C: Break_blocks conversion of gvcf -> vcf
5.7 years ago by dec986 ▴ 380
1
vote
4
replies
1.6k
views
Break_blocks conversion of gvcf -> vcf
VCF
updated 5.7 years ago by 89k • written 5.7 years ago by ▴ 380
1
vote
1
reply
783
views
creating specific bed file from VCF
vcf vcf2bed
5.8 years ago by dec986 ▴ 380
0
votes
1
reply
4.1k
views
Comment: C: vcftools not ouputting log file when run from perl
5.8 years ago by dec986 ▴ 380
0
votes
0
replies
4.1k
views
Comment: C: vcftools not ouputting log file when run from perl
5.8 years ago by dec986 ▴ 380
0
votes
1
reply
4.1k
views
Comment: C: vcftools not ouputting log file when run from perl
5.8 years ago by dec986 ▴ 380
0
votes
1
reply
4.1k
views
Comment: C: vcftools not ouputting log file when run from perl
5.8 years ago by dec986 ▴ 380
0
votes
1
reply
4.1k
views
Comment: C: vcftools not ouputting log file when run from perl
5.8 years ago by dec986 ▴ 380
0
votes
0
replies
4.1k
views
Comment: C: vcftools not ouputting log file when run from perl
5.8 years ago by dec986 ▴ 380
0
votes
0
replies
4.1k
views
Comment: C: vcftools not ouputting log file when run from perl
5.8 years ago by dec986 ▴ 380
0
votes
2
replies
4.1k
views
Comment: C: vcftools not ouputting log file when run from perl
5.8 years ago by dec986 ▴ 380
1
vote
0
replies
2.8k
views
Comment: C: Cannot identify software used to make image
6.6 years ago by dec986 ▴ 380
1
vote
1
reply
2.8k
views
Comment: C: Cannot identify software used to make image
6.6 years ago by dec986 ▴ 380
11
votes
6
replies
2.8k
views
Cannot identify software used to make image
DMR
updated 6.6 years ago by ★ 3.4k • written 6.6 years ago by ▴ 380
0
votes
0
replies
2.4k
views
Comment: C: Diploid calls on chrY?
6.6 years ago by dec986 ▴ 380
2
votes
6
replies
2.4k
views
Diploid calls on chrY?
genome vcf
updated 6.6 years ago by 16k • written 6.6 years ago by ▴ 380
0
votes
1
reply
2.4k
views
Comment: C: Diploid calls on chrY?
6.6 years ago by dec986 ▴ 380
0
votes
1
reply
3.5k
views
Comment: C: samtools sort doesn't finish sorting bam file, just hangs for hours
6.8 years ago by dec986 ▴ 380
4
votes
6
replies
3.5k
views
samtools sort doesn't finish sorting bam file, just hangs for hours
samtools
6.8 years ago by dec986 ▴ 380
0
votes
5
replies
3.2k
views
Zero Counts for many genes in 1 replicate, why?
cufflinks RNA-Seq
updated 2.8 years ago by 45k • written 10.2 years ago by ▴ 380
3
votes
2
replies
1.5k
views
Measure Sequencing Depth in aligned BAM file
RNA-Seq
updated 7.1 years ago by 20 • written 7.2 years ago by ▴ 380
1
vote
5
replies
3.9k
views
Differential Expression with Ballgown
RNA-Seq R
updated 7.1 years ago by 20 • written 7.1 years ago by ▴ 380
1
vote
10
replies
6.7k
views
how to get counts/TPM/etc. from stringtie?
RNA-Seq
updated 7.1 years ago by • 0 • written 7.1 years ago by ▴ 380
0
votes
1
reply
6.7k
views
Comment: C: how to get counts/TPM/etc. from stringtie?
7.1 years ago by dec986 ▴ 380
0
votes
1
reply
6.7k
views
Comment: C: how to get counts/TPM/etc. from stringtie?
7.1 years ago by dec986 ▴ 380
0
votes
1
reply
6.7k
views
Comment: C: how to get counts/TPM/etc. from stringtie?
7.1 years ago by dec986 ▴ 380
0
votes
0
replies
3.9k
views
Comment: C: Differential Expression with Ballgown
7.1 years ago by dec986 ▴ 380
0
votes
1
reply
3.9k
views
Comment: C: Differential Expression with Ballgown
7.1 years ago by dec986 ▴ 380
0
votes
1
reply
2.6k
views
Comment: C: R: Ballgown load fails
7.1 years ago by dec986 ▴ 380
2
votes
3
replies
2.6k
views
R: Ballgown load fails
RNA-Seq R software error
7.1 years ago by dec986 ▴ 380
0
votes
1
reply
5.2k
views
Comment: C: STAR Alignment Score reduced after trimming
7.2 years ago by dec986 ▴ 380
2
votes
1
reply
1.7k
views
samtools stats typical ranges and explicit definitions
samtools RNA-Seq
7.2 years ago by dec986 ▴ 380
4
votes
1
reply
3.9k
views
Meaning of Decimal points in ENST notation
rna-seq
updated 7.2 years ago by ▴ 640 • written 7.2 years ago by ▴ 380
0
votes
1
reply
12k
views
Comment: C: Automating Gorilla And/Or Revigo Analysis
7.4 years ago by dec986 ▴ 380
0
votes
0
replies
2.0k
views
MSigDB gene set enrichment analysis
gene ontology gsea
7.4 years ago by dec986 ▴ 380
0
votes
0
replies
2.9k
views
Comment: C: [Opinion] - What alignment software do you use?
7.5 years ago by dec986 ▴ 380
3
votes
3
replies
2.9k
views
Answer: A: [Opinion] - What alignment software do you use?
7.5 years ago by dec986 ▴ 380
0
votes
0
replies
6.3k
views
Comment: C: Differentially methylated regions: Easy & Fast Identification and ANnoTation
7.5 years ago by dec986 ▴ 380
0
votes
0
replies
1.8k
views
Choice of Gene Length in TPM Calculations
RNA-Seq tpm
7.6 years ago by dec986 ▴ 380
0
votes
2
replies
1.6k
views
Creating genome alignment
STAR RNA-Seq
updated 7.6 years ago by ▴ 480 • written 7.6 years ago by ▴ 380
0
votes
0
replies
5.2k
views
Comment: C: STAR Alignment Score reduced after trimming
7.6 years ago by dec986 ▴ 380
219 results • Page 3 of 5
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6