Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
2.9k
views
Answer: A: Open Reading Frame
9.4 years ago by EVR ▴ 610
3
votes
5
replies
10k
views
Finding overlapping ranges in R
RNA-Seq R Overlapping-ranges
updated 9.4 years ago by ★ 3.2k • written 9.4 years ago by ▴ 610
0
votes
0
replies
1.3k
views
Finidng the closest features near transcript boundaries in genome
RNA-Seq bedtools bedops joining-features
9.4 years ago by EVR ▴ 610
0
votes
4
replies
3.5k
views
Extracing the regions outside the target(transctip) region in genome
RNA-Seq bedtools samtools bam_file genome
updated 9.4 years ago by 20 • written 9.6 years ago by ▴ 610
1
vote
1
reply
2.6k
views
Comment: C: RNASeq DE analysis between tumor and normal tissues
9.4 years ago by EVR ▴ 610
1
vote
1
reply
8.4k
views
Answer: A: TMM - Normalized FPKM values for RNASeq data ?
9.4 years ago by EVR ▴ 610
0
votes
1
reply
2.8k
views
Answer: A: How to annotate one GenomicRanges object using another?
9.4 years ago by EVR ▴ 610
2
votes
3
replies
2.6k
views
Reading bam files and extratcing transcript from abm files in R
RNA-Seq bam samtools
updated 9.5 years ago by 12k • written 9.5 years ago by ▴ 610
0
votes
0
replies
2.6k
views
Comment: C: Reading bam files and extratcing transcript from abm files in R
9.5 years ago by EVR ▴ 610
0
votes
0
replies
4.7k
views
Comment: C: DESeq without replicate nbinomTest method
9.5 years ago by EVR ▴ 610
0
votes
1
reply
2.6k
views
Comment: C: Detecting the peaks from RNAseq data
9.5 years ago by EVR ▴ 610
0
votes
4
replies
2.6k
views
Detecting the peaks from RNAseq data
RNA-Seq peak bam
updated 9.5 years ago by ★ 5.2k • written 9.5 years ago by ▴ 610
3
votes
0
replies
10k
views
Comment: C: heatmap.2 has become very slow in plotting heatmap.
9.5 years ago by EVR ▴ 610
2
votes
1
reply
13k
views
Answer: A: How to get the alignment summary of HISAT2
9.5 years ago by EVR ▴ 610
0
votes
0
replies
10.0k
views
Comment: C: how to pool together biological replicates?
9.5 years ago by EVR ▴ 610
2
votes
0
replies
2.6k
views
Comment: C: taking intersection between two networks
9.5 years ago by EVR ▴ 610
1
vote
1
reply
10.0k
views
Answer: A: how to pool together biological replicates?
9.5 years ago by EVR ▴ 610
1
vote
1
reply
2.6k
views
Comment: C: taking intersection between two networks
9.5 years ago by EVR ▴ 610
0
votes
2
replies
1.2k
views
Comment: C: Mappping read to its exact postion in genome
9.5 years ago by EVR ▴ 610
1
vote
4
replies
1.2k
views
Mappping read to its exact postion in genome
RNA-Seq TOPHAT
updated 9.5 years ago by 105k • written 9.5 years ago by ▴ 610
0
votes
1
reply
7.0k
views
Comment: C: Mapping with tophat2 and setting a Tophat2 output directory?
9.5 years ago by EVR ▴ 610
0
votes
1
reply
1.5k
views
Computing Genome Duplication
genome Duplication RNA-Seq
9.5 years ago by EVR ▴ 610
2
votes
0
replies
2.7k
views
Answer: A: How to find differentially expressed genes after mapping with Stampy?
9.6 years ago by EVR ▴ 610
0
votes
2
replies
3.3k
views
Comment: C: Counting reads within regions of interest
9.6 years ago by EVR ▴ 610
0
votes
5
replies
3.3k
views
Counting reads within regions of interest
bam RNA-Seq coverage
9.6 years ago by EVR ▴ 610
0
votes
0
replies
3.5k
views
Comment: C: Extracing the regions outside the target(transctip) region in genome
9.6 years ago by EVR ▴ 610
0
votes
1
reply
3.5k
views
Comment: C: Extracing the regions outside the target(transctip) region in genome
9.6 years ago by EVR ▴ 610
0
votes
1
reply
29k
views
Comment: C: Cleaning RNA-Seq data from rRNA
9.6 years ago by EVR ▴ 610
1
vote
2
replies
29k
views
Answer: A: Cleaning RNA-Seq data from rRNA
9.6 years ago by EVR ▴ 610
0
votes
0
replies
5.2k
views
Answer: A: statistical value meaning
9.6 years ago by EVR ▴ 610
0
votes
1
reply
4.7k
views
Comment: C: Filtering by FPKM, opinions and thoughts
9.6 years ago by EVR ▴ 610
0
votes
1
reply
2.0k
views
Comment: C: Counting reads on genome
9.6 years ago by EVR ▴ 610
0
votes
1
reply
3.2k
views
Answer: A: How to split genome coverage by read length in Ribo-Seq data
9.6 years ago by EVR ▴ 610
1
vote
0
replies
3.2k
views
Answer: A: How to split genome coverage by read length in Ribo-Seq data
9.6 years ago by EVR ▴ 610
0
votes
0
replies
3.1k
views
Comment: C: Identifying full length transcripts in a transcriptome
9.6 years ago by EVR ▴ 610
0
votes
4
replies
2.0k
views
Counting reads on genome
RNA-Seq genome transcriptome
updated 9.6 years ago by ★ 2.1k • written 9.6 years ago by ▴ 610
3
votes
6
replies
3.1k
views
Identifying full length transcripts in a transcriptome
de-novo-Transcriptome full-length-transcripts
updated 3.3 years ago by 45k • written 9.8 years ago by ▴ 610
1
vote
5
replies
3.7k
views
Aligning reads to genome together with transcriptome
RNA-Seq Genome Transcriptome alignment
updated 3.3 years ago by 45k • written 9.7 years ago by ▴ 610
1
vote
1
reply
1.4k
views
Comment: Comment: relating the number with gene names in a list of genes
updated 3.3 years ago by 45k • written 9.7 years ago by ▴ 610
2
votes
1
reply
3.0k
views
Answer: A: Trinity assembly and ORF decoder issue
9.7 years ago by EVR ▴ 610
0
votes
0
replies
3.1k
views
Comment: C: Identifying full length transcripts in a transcriptome
9.8 years ago by EVR ▴ 610
1
vote
1
reply
4.5k
views
Generating GTF file for de novo assmebled transcriptome
GTF Transcriptome
updated 9.9 years ago by 8.4k • written 9.9 years ago by ▴ 610
0
votes
4
replies
7.1k
views
Log2 fold change heatmap
Log2foldchange heatmap Microarray
updated 3.2 years ago by 45k • written 9.9 years ago by ▴ 610
0
votes
0
replies
7.1k
views
Comment: C: Log2 fold change heatmap
9.9 years ago by EVR ▴ 610
0
votes
1
reply
5.8k
views
Answer: A: Heatmap of Differentially Expressed Genes
9.9 years ago by EVR ▴ 610
1
vote
1
reply
2.8k
views
Quality control for AB Solid fastq files
Fastqc AB-Solid RNA-Seq
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 610
13
votes
10
replies
11k
views
Finding the iIllumina index read from raw fastq file
RNA-Seq illumina index-read
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 610
0
votes
0
replies
11k
views
Comment: C: Finding the iIllumina index read from raw fastq file
10.1 years ago by EVR ▴ 610
0
votes
2
replies
11k
views
Comment: C: Finding the iIllumina index read from raw fastq file
10.1 years ago by EVR ▴ 610
0
votes
1
reply
11k
views
Comment: Comment: Finding the iIllumina index read from raw fastq file
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 610
172 results • Page 3 of 4
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6