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Which plan is more reasonable, gsea on total dataset , on subset of total dataset with DEG or preRanked gsea?
GSEA DEG
updated 8.0 years ago by 13k • written 8.0 years ago by ▴ 220
0
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1
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3.8k
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Comment: C: which set of results are more reliable and precise for DEG analysis, limma vs GS
8.0 years ago by Shamim Sarhadi ▴ 220
0
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1
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3.8k
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Comment: C: which set of results are more reliable and precise for DEG analysis, limma vs GS
8.0 years ago by Shamim Sarhadi ▴ 220
6
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13
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3.8k
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which set of results are more reliable and precise for DEG analysis, limma vs GSEA ?
DEG Limma GSEA
updated 8.0 years ago by ★ 5.2k • written 8.0 years ago by ▴ 220
0
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0
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1.3k
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Selecting present prob-id after performing pa.calls function from panp package on eSet
pa.calls filtering eSet
8.1 years ago by Shamim Sarhadi ▴ 220
4
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4
replies
9.6k
views
cannot allocate vector of size 64.1 Mb
memory managmet
updated 8.1 years ago by 20 • written 8.1 years ago by ▴ 220
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0
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9.6k
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Comment: C: cannot allocate vector of size 64.1 Mb
8.1 years ago by Shamim Sarhadi ▴ 220
0
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1
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9.6k
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Comment: C: cannot allocate vector of size 64.1 Mb
8.1 years ago by Shamim Sarhadi ▴ 220
0
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0
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1.6k
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Answer: A: gene list -interactions
8.1 years ago by Shamim Sarhadi ▴ 220
1
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0
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2.2k
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Answer: A: Differential gene expression
8.1 years ago by Shamim Sarhadi ▴ 220
0
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0
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4.3k
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Comment: C: Microarray adata Normalization using GEO2R?
8.1 years ago by Shamim Sarhadi ▴ 220
0
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0
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1.6k
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Comment: C: A rational way for selecting the number of DEG with significant p-value for GSEA
8.1 years ago by Shamim Sarhadi ▴ 220
0
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2
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1.6k
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A rational way for selecting the number of DEG with significant p-value for GSEA
DEG GSEA
updated 8.1 years ago by 8.3k • written 8.1 years ago by ▴ 220
0
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0
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1.6k
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Comment: C: protein structure modeling
8.1 years ago by Shamim Sarhadi ▴ 220
0
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1
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1.6k
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Comment: C: protein structure modeling
8.1 years ago by Shamim Sarhadi ▴ 220
2
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5
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1.6k
views
protein structure modeling
protein modeling
updated 8.1 years ago by ★ 1.2k • written 8.1 years ago by ▴ 220
0
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0
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1.6k
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Comment: C: drop levels in eSet pData
8.1 years ago by Shamim Sarhadi ▴ 220
0
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0
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2.5k
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Comment: C: subsetting of expressionSet
8.1 years ago by Shamim Sarhadi ▴ 220
0
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2
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1.6k
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drop levels in eSet pData
eSet subsetting
updated 8.1 years ago by 6.5k • written 8.1 years ago by ▴ 220
1
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0
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1.6k
views
giving weight to DEG from limma output
GSEA limma DEG
8.1 years ago by Shamim Sarhadi ▴ 220
0
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0
replies
1.8k
views
Conversion of Eset to gct file
gct eset
updated 13 months ago by 43k • written 8.1 years ago by ▴ 220
1
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2
replies
2.5k
views
subsetting of expressionSet
R bioconductor
updated 8.2 years ago by ▴ 100 • written 8.2 years ago by ▴ 220
3
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1
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3.4k
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Answer: A: Bioinformatics for a medical student with interest in genetics
8.2 years ago by Shamim Sarhadi ▴ 220
0
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1
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1.8k
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Comment: C: I'm looking for a filtering method that it does't use genewise variances
8.3 years ago by Shamim Sarhadi ▴ 220
2
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4
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1.8k
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I'm looking for a filtering method that it does't use genewise variances
R genefilter limma
updated 21 months ago by 43k • written 8.4 years ago by ▴ 220
2
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2
replies
1.6k
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normalizing methods for microarray
R bioconductor statistics
updated 19 months ago by 43k • written 8.6 years ago by ▴ 220
4
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5
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6.4k
views
sorting my data based on p-value
R statistics
updated 19 months ago by 43k • written 8.7 years ago by ▴ 220
0
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0
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32k
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Comment: Comment: Machine Learning For Cancer Classification - Part 1 - Preparing The Data Sets
updated 19 months ago by 43k • written 8.7 years ago by ▴ 220
0
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0
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3.4k
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Comment: Comment: creating a heatmap from ExpressionSet
updated 19 months ago by 43k • written 8.7 years ago by ▴ 220
0
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0
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2.4k
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Comment: Comment: converting Probs Id to gene name
updated 19 months ago by 43k • written 8.7 years ago by ▴ 220
0
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1
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2.4k
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Comment: Comment: converting Probs Id to gene name
updated 19 months ago by 43k • written 8.7 years ago by ▴ 220
0
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1
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2.4k
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Comment: Comment: converting Probs Id to gene name
updated 19 months ago by 43k • written 8.7 years ago by ▴ 220
3
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6
replies
2.4k
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converting Probs Id to gene name
genome R
updated 19 months ago by 43k • written 8.7 years ago by ▴ 220
0
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0
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70k
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Comment: Comment: Converting Affymetrix Probes To Gene Ids
updated 19 months ago by 43k • written 8.7 years ago by ▴ 220
7
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5
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3.4k
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creating a heatmap from ExpressionSet
R
updated 19 months ago by 43k • written 8.7 years ago by ▴ 220
0
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0
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3.4k
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Comment: C: creating a heatmap from ExpressionSet
8.7 years ago by Shamim Sarhadi ▴ 220
0
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1
reply
1.4k
views
what is the best way for crass platform gene expression analysis?
genome R
updated 16 months ago by 43k • written 8.8 years ago by ▴ 220
0
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1
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7.6k
views
Comment: Comment: Error in `[.data.frame`(pData(eset), , symLabel) : undefined columns selected
updated 16 months ago by 43k • written 8.9 years ago by ▴ 220
0
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0
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2.0k
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Comment: Comment: access to dataset in insilicodb
updated 14 months ago by 43k • written 9.0 years ago by ▴ 220
0
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1
reply
1.0k
views
integrate of microarray
software error
9.0 years ago by Shamim Sarhadi ▴ 220
90 results • Page 2 of 2
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