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3.7k
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DEG analysis by limma
limma
updated 2.1 years ago by 44k • written 8.1 years ago by ▴ 220
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0
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15k
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Comment: C: Error in (function (classes, fdef, mtable): unable to find an inherited method f
updated 5.1 years ago by 44k • written 9.6 years ago by ▴ 220
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1
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9.8k
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Comment: A: How To Merge Two Microarrays Datasets?
updated 5.1 years ago by 44k • written 9.9 years ago by ▴ 220
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0
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1.9k
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Comment: C: I'm looking for a filtering method that it does't use genewise variances
updated 5.1 years ago by 44k • written 9.1 years ago by ▴ 220
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0
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2.3k
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Answer: A: Microarray data : filtring genes with 2 fold above the control
updated 5.1 years ago by 44k • written 9.1 years ago by ▴ 220
1
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0
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3.7k
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Answer: A: High School Researcher: Is it possible to gain access to publicly available whol
updated 5.2 years ago by 44k • written 9.3 years ago by ▴ 220
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2
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6.9k
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Comment: Comment: sorting my data based on p-value
updated 2.3 years ago by 44k • written 9.4 years ago by ▴ 220
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1
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2.6k
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Answer: A: Tools for finding tissue specific gene expression "markers"?
5.4 years ago by Shamim Sarhadi ▴ 220
3
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2
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1.4k
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Binary mutation data format
Mutation data TCGA DawnRank R
updated 5.8 years ago by 13k • written 5.8 years ago by ▴ 220
3
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3
replies
1.4k
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Estimating the purity of tumor cells in gene expression microarray data
Microarray cell purity
6.4 years ago by Shamim Sarhadi ▴ 220
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2
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1.3k
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Longitudinal breast cancer data
Database Longitudinal data Genome tarnscriptome
6.6 years ago by Shamim Sarhadi ▴ 220
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0
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1.8k
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Answer: A: How to optimize the homology modeling?
6.6 years ago by Shamim Sarhadi ▴ 220
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1
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1.5k
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Comment: C: Gene expression study
6.9 years ago by Shamim Sarhadi ▴ 220
4
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5
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6.4k
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Cut-off for genesets in GSEA
GSEA
updated 7.2 years ago by ▴ 1000 • written 7.2 years ago by ▴ 220
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0
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6.4k
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Comment: A: Cut-off for genesets in GSEA
7.2 years ago by Shamim Sarhadi ▴ 220
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1
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6.4k
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Comment: C: Cut-off for genesets in GSEA
7.2 years ago by Shamim Sarhadi ▴ 220
2
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1
reply
2.4k
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Gene set enrichment analysis
GSEA enrichment analysis DEG analysis
7.2 years ago by Shamim Sarhadi ▴ 220
30
votes
8
replies
14k
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Reporting p.value for my PCA results
PCA gene expression
updated 7.3 years ago by 88k • written 7.3 years ago by ▴ 220
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0
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2.2k
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Comment: C: gene expression data analysis and batch effect methods
7.7 years ago by Shamim Sarhadi ▴ 220
1
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3
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2.2k
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gene expression data analysis and batch effect methods
microarray Gene-expression batch-effect
updated 9 months ago by 44k • written 7.7 years ago by ▴ 220
5
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11
replies
3.9k
views
The number of cluster in Kmean clustering
statistics
updated 8.0 years ago by 4.2k • written 8.6 years ago by ▴ 220
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0
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1.7k
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Comment: C: Looking for a Transcriptome meta-analysis algorithm
8.1 years ago by Shamim Sarhadi ▴ 220
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1
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3.3k
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Comment: C: A question about adjust-pvalue in gene expression analysis
8.3 years ago by Shamim Sarhadi ▴ 220
1
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4
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3.3k
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A question about adjust-pvalue in gene expression analysis
Gene expression analysis meta-analysis statistics
8.3 years ago by Shamim Sarhadi ▴ 220
1
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1
reply
1.7k
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Protein modelling with modeller
proteing modeling modeller
8.5 years ago by Shamim Sarhadi ▴ 220
0
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1
reply
1.7k
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CEL file to expressionSet
Affy CEl Expressionset
8.6 years ago by Shamim Sarhadi ▴ 220
0
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1
reply
1.4k
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Which one of protein modeling programs is better?
protein modelling
8.6 years ago by Shamim Sarhadi ▴ 220
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0
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4.0k
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Comment: C: Retrieving gene names from list of mRNA accession IDs
8.6 years ago by Shamim Sarhadi ▴ 220
0
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0
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3.9k
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Comment: C: Importance of Array Quality Control - arrayQualityMetrics (PART I)
8.6 years ago by Shamim Sarhadi ▴ 220
0
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0
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2.2k
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Comment: C: Analysing gene expression across clinical parameters
8.6 years ago by Shamim Sarhadi ▴ 220
0
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0
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3.9k
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Comment: C: The number of cluster in Kmean clustering
8.6 years ago by Shamim Sarhadi ▴ 220
0
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0
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3.9k
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Comment: C: The number of cluster in Kmean clustering
8.6 years ago by Shamim Sarhadi ▴ 220
0
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1
reply
3.9k
views
Comment: C: The number of cluster in Kmean clustering
8.6 years ago by Shamim Sarhadi ▴ 220
0
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2
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3.9k
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Comment: C: The number of cluster in Kmean clustering
8.6 years ago by Shamim Sarhadi ▴ 220
1
vote
1
reply
7.4k
views
Comment: C: creating sub-network from a gene list in cytoscape
8.6 years ago by Shamim Sarhadi ▴ 220
1
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1
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7.4k
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Comment: C: creating sub-network from a gene list in cytoscape
8.6 years ago by Shamim Sarhadi ▴ 220
1
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1
reply
7.4k
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Comment: C: creating sub-network from a gene list in cytoscape
8.6 years ago by Shamim Sarhadi ▴ 220
2
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0
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1.9k
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Comment: C: getting gene functions for a group of genes
8.6 years ago by Shamim Sarhadi ▴ 220
0
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0
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2.3k
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Comment: C: network analysis of DEGs
8.6 years ago by Shamim Sarhadi ▴ 220
0
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2
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2.3k
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network analysis of DEGs
network analysis module finder DEG
8.6 years ago by Shamim Sarhadi ▴ 220
1
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1
reply
3.7k
views
Comment: C: Error in R Script
8.6 years ago by Shamim Sarhadi ▴ 220
0
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0
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3.7k
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Comment: C: Error in R Script
8.6 years ago by Shamim Sarhadi ▴ 220
1
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0
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3.9k
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Comment: C: normalizing CEL files from Affymetrix Human Genome U133 Plus 2.0 Array and Affym
8.6 years ago by Shamim Sarhadi ▴ 220
3
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9
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8.0k
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Error in `[.data.frame`(pData(eset), , symLabel) : undefined columns selected
R
updated 2.1 years ago by 44k • written 9.7 years ago by ▴ 220
0
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1
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8.0k
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Answer: A: Error in `[.data.frame`(pData(eset), , symLabel) : undefined columns selected
8.7 years ago by Shamim Sarhadi ▴ 220
1
vote
1
reply
8.0k
views
Comment: Comment: Error in `[.data.frame`(pData(eset), , symLabel) : undefined columns selected
updated 2.1 years ago by 44k • written 8.7 years ago by ▴ 220
0
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0
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2.5k
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Comment: C: how can i convert my gene list to a format that reactome recognises?
8.7 years ago by Shamim Sarhadi ▴ 220
0
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1
reply
2.5k
views
Comment: C: how can i convert my gene list to a format that reactome recognises?
8.7 years ago by Shamim Sarhadi ▴ 220
0
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0
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3.5k
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Answer: A: Error of Memory Size in R
8.7 years ago by Shamim Sarhadi ▴ 220
0
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3
replies
2.2k
views
access to dataset in insilicodb
R
updated 24 months ago by 44k • written 9.7 years ago by ▴ 220
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