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0
votes
0
replies
14k
views
Comment:
C: how to make a .tbi file of .gtf.gz?
4.3 years ago by
fwuffy
▴ 110
0
votes
0
replies
2.1k
views
Comment:
C: Detailed process for building snpEff database for NCBI RefSeq genomes?
4.3 years ago by
fwuffy
▴ 110
1
vote
2
replies
2.1k
views
Detailed process for building snpEff database for NCBI RefSeq genomes?
snpeff
genome
database
4.3 years ago by
fwuffy
▴ 110
12
votes
2
replies
2.6k
views
BWA Mem -M flag (mark split hits) effect on structural variation calling
bwa
structural-variations
delly
updated 5.0 years ago by
trausch
★ 1.9k • written 5.0 years ago by
fwuffy
▴ 110
5
votes
4
replies
1.8k
views
Looking for a database containing the least-conserved, most highly polymorphic SNPs (or regions) of the human genome (hg38)
conservation
human
SNP
updated 5.8 years ago by
colindaven
6.9k • written 5.8 years ago by
fwuffy
▴ 110
0
votes
1
reply
1.8k
views
Comment:
C: Looking for a database containing the least-conserved, most highly polymorphic S
5.8 years ago by
fwuffy
▴ 110
3
votes
2
replies
5.9k
views
Filtering VCF with vcf-tools using --maf=0.0001 filters out all homozygous calls ?!
vcf
vcftools
variants
updated 20 months ago by
Ram
44k • written 6.7 years ago by
fwuffy
▴ 110
0
votes
1
reply
2.4k
views
Can anyone tell me why BCFTools Call would call a homozygous variant at this position with 1/2 alt variant reads?
bcftools
vcf
variants
6.7 years ago by
fwuffy
▴ 110
0
votes
0
replies
3.1k
views
Comment:
C: Picard MarkDuplicates fatal error
6.7 years ago by
fwuffy
▴ 110
0
votes
0
replies
3.1k
views
Comment:
C: Picard MarkDuplicates fatal error
6.7 years ago by
fwuffy
▴ 110
5
votes
3
replies
3.1k
views
Picard MarkDuplicates fatal error
Picard
markduplicates
updated 6.7 years ago by
h.mon
35k • written 6.7 years ago by
fwuffy
▴ 110
0
votes
0
replies
1.9k
views
Comment:
C: VCF PL Values not making sense
6.8 years ago by
fwuffy
▴ 110
2
votes
3
replies
1.9k
views
VCF PL Values not making sense
vcf
6.8 years ago by
fwuffy
▴ 110
0
votes
2
replies
16k
views
Answer:
A: Number of Threads for BWA MEM
6.9 years ago by
fwuffy
▴ 110
0
votes
0
replies
3.5k
views
Comment:
C: COSMIC hg38 free version
7.6 years ago by
fwuffy
▴ 110
4
votes
3
replies
3.5k
views
COSMIC hg38 free version
cosmic
vcf
cancer
updated 3.1 years ago by
Ram
44k • written 8.8 years ago by
fwuffy
▴ 110
0
votes
1
reply
2.7k
views
SnpSift annotate reporting extra alleles not present in the input VCF
SnpEff
SNP
SnpSift
updated 23 months ago by
Ram
44k • written 9.4 years ago by
fwuffy
▴ 110
1
vote
3
replies
6.3k
views
Convert VCF to BCF
vcf
bcf
vcftools
updated 22 months ago by
Ram
44k • written 9.4 years ago by
fwuffy
▴ 110
15
votes
19
replies
9.6k
views
Samtools mpileup quality scores all zero
next-gen
SNP
alignment
updated 22 months ago by
Ram
44k • written 9.4 years ago by
fwuffy
▴ 110
1
vote
0
replies
9.6k
views
Comment:
C: Samtools mpileup quality scores all zero
9.4 years ago by
fwuffy
▴ 110
0
votes
1
reply
9.6k
views
Comment:
Comment: Samtools mpileup quality scores all zero
updated 22 months ago by
Ram
44k • written 9.4 years ago by
fwuffy
▴ 110
0
votes
1
reply
9.6k
views
Comment:
Comment: Samtools mpileup quality scores all zero
updated 22 months ago by
Ram
44k • written 9.4 years ago by
fwuffy
▴ 110
0
votes
0
replies
9.6k
views
Comment:
Comment: Samtools mpileup quality scores all zero
updated 22 months ago by
Ram
44k • written 9.4 years ago by
fwuffy
▴ 110
0
votes
1
reply
9.6k
views
Comment:
Comment: Samtools mpileup quality scores all zero
updated 22 months ago by
Ram
44k • written 9.4 years ago by
fwuffy
▴ 110
0
votes
1
reply
9.6k
views
Comment:
C: Samtools mpileup quality scores all zero
9.4 years ago by
fwuffy
▴ 110
1
vote
0
replies
9.6k
views
Comment:
Comment: Samtools mpileup quality scores all zero
updated 22 months ago by
Ram
44k • written 9.4 years ago by
fwuffy
▴ 110
1
vote
0
replies
9.6k
views
Comment:
Comment: Samtools mpileup quality scores all zero
updated 22 months ago by
Ram
44k • written 9.4 years ago by
fwuffy
▴ 110
1
vote
0
replies
9.6k
views
Comment:
Comment: Samtools mpileup quality scores all zero
updated 22 months ago by
Ram
44k • written 9.4 years ago by
fwuffy
▴ 110
0
votes
1
reply
7.0k
views
Comment:
Comment: Publicly Available Tumor/Normal Illumina Data For Evaluation Of Somatic Variant
updated 2.4 years ago by
Ram
44k • written 9.6 years ago by
fwuffy
▴ 110
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