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2.6k
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Adjusting for batch effect and covariates with ComBat
batch-effect RNA-Seq combat
updated 11 months ago by 43k • written 3.5 years ago by ▴ 40
6
votes
3
replies
2.6k
views
Does GSVA normalize sampleset?
gsva ssgsea rna-seq
updated 3.3 years ago by ▴ 270 • written 3.3 years ago by ▴ 40
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1
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2.6k
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Answer: A: Does GSVA normalize sampleset?
3.3 years ago by juara ▴ 40
0
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0
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635
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Extract cNMF cluster membership
nmf
3.3 years ago by juara ▴ 40
2
votes
2
replies
738
views
Counts plot does not match fold change between groups
RNA-Seq DEseq2
updated 3.5 years ago by ▴ 480 • written 3.5 years ago by ▴ 40
0
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0
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1.5k
views
Mutect2 t_depth not matching total reads
next-gen snp sequencing mutect2 gatk
5.8 years ago by juara ▴ 40
0
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0
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3.5k
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Comment: C: VCF files-Keep all alternative alleles
5.8 years ago by juara ▴ 40
0
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0
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3.5k
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Comment: C: VCF files-Keep all alternative alleles
5.8 years ago by juara ▴ 40
6
votes
4
replies
3.5k
views
VCF files-Keep all alternative alleles
snp bcftools vcf vcftools samtools
updated 5.8 years ago by 161k • written 5.8 years ago by ▴ 40
3
votes
1
reply
2.1k
views
Download slices of SRA/FastQ files?
next-gen WGS sequencing data retrieval
6.5 years ago by juara ▴ 40
0
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0
replies
2.3k
views
Comment: C: PDB visualization methods
6.8 years ago by juara ▴ 40
0
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2
replies
2.3k
views
Comment: C: PDB visualization methods
6.8 years ago by juara ▴ 40
0
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2
replies
2.3k
views
Comment: C: PDB visualization methods
6.8 years ago by juara ▴ 40
1
vote
9
replies
2.3k
views
PDB visualization methods
PDB Structure visualizer
updated 6.8 years ago by 35k • written 6.8 years ago by ▴ 40
0
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0
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1.9k
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Comment: C: TCGA exons data-de novo isoform assembly
7.8 years ago by juara ▴ 40
0
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1
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1.9k
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Comment: C: TCGA exons data-de novo isoform assembly
7.8 years ago by juara ▴ 40
2
votes
4
replies
1.9k
views
TCGA exons data-de novo isoform assembly
RNA-Seq tcga RPKM transcript
7.8 years ago by juara ▴ 40
2
votes
1
reply
4.3k
views
TCGA data analysis, raw_count?!
RNA-Seq R TCGA
updated 16 months ago by 43k • written 8.9 years ago by ▴ 40
0
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1
reply
4.3k
views
Comment: Comment: TCGA normalized count data of 1000 samples for DGE
updated 15 months ago by 43k • written 9.0 years ago by ▴ 40
0
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1
reply
4.3k
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Comment: Comment: TCGA normalized count data of 1000 samples for DGE
updated 15 months ago by 43k • written 9.0 years ago by ▴ 40
0
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1
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4.3k
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Comment: Comment: TCGA normalized count data of 1000 samples for DGE
updated 15 months ago by 43k • written 9.0 years ago by ▴ 40
0
votes
1
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38k
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Answer: Answer: Interpreting TCGA .rsem.genes.results and .rsem.genes.normalized_results files.
updated 15 months ago by 43k • written 9.0 years ago by ▴ 40
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