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1
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3.2k
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How to make complex contrasts in DiffBind dba.contrast
DiffBind R dba.contrast
updated 21 months ago by 45k • written 4.8 years ago by ▴ 270
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1.7k
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Comment: C: Error while invoking. dba.analyze() in DiffBind
4.8 years ago by Bioinformatist Newbie ▴ 270
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0
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3.0k
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Comment: C: DiffBind - Erroneous Affinity Shift In One Direction
4.8 years ago by Bioinformatist Newbie ▴ 270
4
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2
replies
1.4k
views
How to check if there is an association between clustering output (groups) and phenotypic variables (gender, disease stage)
Clustering Association phenotype statistics
4.8 years ago by Bioinformatist Newbie ▴ 270
1
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1
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9.3k
views
Answer: A: htseq-count cannot find pysam
updated 5.3 years ago by 45k • written 8.9 years ago by ▴ 270
0
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0
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2.7k
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Comment: C: How to identify Accessible genes from DNase-seq?
updated 5.3 years ago by 45k • written 9.3 years ago by ▴ 270
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0
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4.4k
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Comment: C: Get gene names from genomic coordinates
updated 5.3 years ago by 45k • written 9.3 years ago by ▴ 270
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0
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2.4k
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Comment: C: How to interpret a heatmap
updated 5.3 years ago by 45k • written 9.4 years ago by ▴ 270
0
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1
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6.1k
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Comment: C: R - Merge 2 network with different color nodes
updated 5.4 years ago by 45k • written 9.5 years ago by ▴ 270
0
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1
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11k
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Comment: C: Network Comparison by comparing two different adjacency matrices
updated 5.4 years ago by 45k • written 9.5 years ago by ▴ 270
0
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1
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11k
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Comment: C: Network Comparison by comparing two different adjacency matrices
updated 5.4 years ago by 45k • written 9.5 years ago by ▴ 270
0
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1
reply
11k
views
Comment: C: Network Comparison by comparing two different adjacency matrices
updated 5.4 years ago by 45k • written 9.5 years ago by ▴ 270
0
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1
reply
11k
views
Comment: C: Network Comparison by comparing two different adjacency matrices
updated 5.4 years ago by 45k • written 9.5 years ago by ▴ 270
0
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0
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3.8k
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Comment: C: WGCNA for less than 15 samples
updated 5.4 years ago by 45k • written 9.6 years ago by ▴ 270
0
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0
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4.0k
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Answer: A: How to upload my own database on CMAP
updated 5.4 years ago by 45k • written 9.6 years ago by ▴ 270
0
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1
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4.9k
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Comment: Comment: GEO2R Analysis on Cel files downloaded from ArrayExpress
updated 2.9 years ago by 45k • written 9.7 years ago by ▴ 270
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0
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5.2k
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Answer: A: Differential expression analysis using Limma (Not on cel files)
updated 5.4 years ago by 45k • written 9.6 years ago by ▴ 270
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0
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5.2k
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Comment: C: Differential expression analysis using Limma (Not on cel files)
updated 5.4 years ago by 45k • written 9.7 years ago by ▴ 270
0
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1
reply
21k
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Comment: C: Pathway Enrichment Analysis, Clustering and Scoring with pathfindR
5.5 years ago by Bioinformatist Newbie ▴ 270
0
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1
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21k
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Comment: C: Pathway Enrichment Analysis, Clustering and Scoring with pathfindR
5.5 years ago by Bioinformatist Newbie ▴ 270
1
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1
reply
2.1k
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Comment: C: how to compare two TF binding sites
6.8 years ago by Bioinformatist Newbie ▴ 270
4
votes
2
replies
3.4k
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Parkinson disease databases
Parkinsons-Disease
updated 2.6 years ago by 45k • written 9.4 years ago by ▴ 270
0
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1
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5.0k
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Comment: C: Peak calling with MACS for paired end DNase-seq data
6.9 years ago by Bioinformatist Newbie ▴ 270
0
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1
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5.0k
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Comment: C: Peak calling with MACS for paired end DNase-seq data
6.9 years ago by Bioinformatist Newbie ▴ 270
0
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0
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5.0k
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Comment: C: Peak calling with MACS for paired end DNase-seq data
6.9 years ago by Bioinformatist Newbie ▴ 270
1
vote
1
reply
1.1k
views
Core transcriptional regulatory network in human
Gene Regulatory Network transcriptional network
updated 6.9 years ago by 36k • written 7.0 years ago by ▴ 270
2
votes
7
replies
5.0k
views
Peak calling with MACS for paired end DNase-seq data
macs2 DNA-seq paired-end BWA
updated 6.9 years ago by 13k • written 6.9 years ago by ▴ 270
0
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0
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9.2k
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Comment: C: ChIP-Seq TSS Line Plot
7.0 years ago by Bioinformatist Newbie ▴ 270
0
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0
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9.4k
views
Comment: C: How to plot ChIP-seq Density vs Distance from TSS using Homer annoted files
7.0 years ago by Bioinformatist Newbie ▴ 270
0
votes
0
replies
1.3k
views
How to plot the TF binding occupancy around a specific regulatory region?
TF-Binding plot ChIP-Seq
7.0 years ago by Bioinformatist Newbie ▴ 270
1
vote
1
reply
1.1k
views
Where can I find the histone modification marks for dementia-related diseases
ChIP-Seq sequencing dementia
7.1 years ago by Bioinformatist Newbie ▴ 270
0
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0
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1.7k
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Comment: C: Gold Standards or Evaluation Criteria for Gene Regulatory Network of Cancer Cell
7.2 years ago by Bioinformatist Newbie ▴ 270
0
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4
replies
3.9k
views
How to apply ChromHMM on ChromImpute output?
ChromHMM ChromImpute BinarizeSignal
updated 7.2 years ago by ▴ 10 • written 7.9 years ago by ▴ 270
1
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1
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2.3k
views
Comment: C: Correlation between methylation's regression values and Gene expression's logFC
7.8 years ago by Bioinformatist Newbie ▴ 270
5
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3
replies
2.3k
views
Correlation between methylation's regression values and Gene expression's logFC
5mC correlation methylation geneExpression
7.8 years ago by Bioinformatist Newbie ▴ 270
0
votes
2
replies
12k
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Comment: C: What is a typical workflow to correlate methylation and expression data?
7.8 years ago by Bioinformatist Newbie ▴ 270
0
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0
replies
3.9k
views
Comment: C: How to apply ChromHMM on ChromImpute output?
7.9 years ago by Bioinformatist Newbie ▴ 270
0
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1
reply
3.9k
views
Comment: C: How to apply ChromHMM on ChromImpute output?
7.9 years ago by Bioinformatist Newbie ▴ 270
0
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0
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4.0k
views
Comment: C: ChromHMM annotation new cell line
7.9 years ago by Bioinformatist Newbie ▴ 270
0
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1
reply
3.6k
views
Comment: C: samtools flagstat returning 0% align reads
8.0 years ago by Bioinformatist Newbie ▴ 270
6
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9
replies
3.6k
views
samtools flagstat returning 0% align reads
PASH 3.0 samtools alignment
8.0 years ago by Bioinformatist Newbie ▴ 270
0
votes
2
replies
3.6k
views
Comment: C: samtools flagstat returning 0% align reads
8.0 years ago by Bioinformatist Newbie ▴ 270
0
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1
reply
3.6k
views
Comment: C: samtools flagstat returning 0% align reads
8.0 years ago by Bioinformatist Newbie ▴ 270
0
votes
0
replies
2.8k
views
Comment: C: Why Pash 3.0 has been chosen for Roadmap Epigenome?
8.0 years ago by Bioinformatist Newbie ▴ 270
0
votes
1
reply
1.6k
views
Comment: C: ChromImpute problem with 'Convert'
8.0 years ago by Bioinformatist Newbie ▴ 270
0
votes
0
replies
1.6k
views
Comment: C: ChromImpute problem with 'Convert'
8.0 years ago by Bioinformatist Newbie ▴ 270
0
votes
4
replies
1.6k
views
ChromImpute problem with 'Convert'
ChromImpute
8.0 years ago by Bioinformatist Newbie ▴ 270
0
votes
0
replies
17k
views
Comment: C: How to generate BedGraph from BedTools Coverage?
8.0 years ago by Bioinformatist Newbie ▴ 270
0
votes
1
reply
2.5k
views
Comment: C: How to assign Active Enhancer to every genes within 10 kb region?
8.1 years ago by Bioinformatist Newbie ▴ 270
0
votes
1
reply
2.5k
views
Comment: C: How to assign Active Enhancer to every genes within 10 kb region?
8.1 years ago by Bioinformatist Newbie ▴ 270
155 results • Page 1 of 4
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