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questions
1
vote
1
reply
2.2k
views
Compare histone modification data with DNA methylation data
methylation
DNA
comparison
chip-seq
correlation
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Saad Khan
▴ 440
0
votes
0
replies
1.6k
views
Storing liftover chain data in a data structure
comparativegenomics
liftover
datastructure
updated 3.1 years ago by
Ram
43k • written 9.5 years ago by
Saad Khan
▴ 440
0
votes
4
replies
2.2k
views
Cancer gene list enrichment
RNA-Seq
background
R
GSEA
cancer
updated 3.1 years ago by
Ram
43k • written 9.5 years ago by
Saad Khan
▴ 440
6
votes
2
replies
2.1k
views
Using GRCH37 with ggbio
ggbio
bioconductor
r
updated 3.1 years ago by
Ram
43k • written 9.6 years ago by
Saad Khan
▴ 440
2
votes
3
replies
2.1k
views
What all informatics approaches are available to compare DNA methylation across species
cross-species
DNA-methylation
comparison
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Saad Khan
▴ 440
4
votes
5
replies
2.7k
views
How to visualize reads at per base position for a SNP
SNP
bam
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Saad Khan
▴ 440
3
votes
8
replies
3.3k
views
Bioconductor packages for comparing different species data (particularly RNA-seq and DNA methylation)
RNA-seq
DNA-methylation
comparative-genomics
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Saad Khan
▴ 440
1
vote
3
replies
3.7k
views
how to get all gc/cpg positions in the latest human genome (gencode hg19)
cpg
hg19
gencode
updated 2.5 years ago by
Ram
43k • written 9.8 years ago by
Saad Khan
▴ 440
1
vote
5
replies
2.9k
views
Analysing MIRA-seq methylation data
Methylation-analysis
MIRA-seq
updated 2.3 years ago by
Ram
43k • written 10.0 years ago by
Saad Khan
▴ 440
1
vote
8
replies
4.5k
views
Best practices of comparing RNA-seq data from two species with few or no replicates
RNA-seq
orthologus-genes
cross-species
updated 2.6 years ago by
Ram
43k • written 10.0 years ago by
Saad Khan
▴ 440
11
votes
5
replies
6.9k
views
De-Novo Genome Assembly Vs Comparative Genome Assembly
assembly
genome
updated 10.7 years ago by
Rohit
★ 1.5k • written 12.9 years ago by
Saad Khan
▴ 440
6
votes
10
replies
3.8k
views
Assembling Sequences Without The Fastq File
assembly
updated 12.9 years ago by
Michael Schubert
★ 7.1k • written 12.9 years ago by
Saad Khan
▴ 440
6
votes
5
replies
5.0k
views
Docking A Small Series Of Compunds Against A Set Of Proteins Using Perl
docking
structural
pymol
updated 12.9 years ago by
Michael Schubert
★ 7.1k • written 12.9 years ago by
Saad Khan
▴ 440
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