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Comment: Comment: ABSOLUTE to estimate tumour purity from WES data
updated 5 months ago by 39k • written 7.3 years ago by ▴ 170
1
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1
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17k
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Answer: A: Software For Hla Typing Using Ngs?
updated 3.5 years ago by 39k • written 7.5 years ago by ▴ 170
9
votes
24
replies
7.7k
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10 follow
Download SAM/BAM files from SRA takes ages!!!
SRA bam
updated 4.6 years ago by ▴ 40 • written 5.8 years ago by ▴ 170
0
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0
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1.7k
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vcf2maf not generating `t_depth t_ref_count t_alt_count` columns in MAF file
vcf maf t_depth t_ref_count talt_count
4.6 years ago by Alejandro Jimenez Sanchez ▴ 170
10
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3
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6.0k
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R phangorn phylogenetic analysis from somatic mutations' binary table
phangorn R tumour phylogeny binary table
updated 4.7 years ago by 39k • written 7.3 years ago by ▴ 170
0
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10
replies
3.8k
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ABSOLUTE MAF error
MAF ABSOLUTE
updated 4.8 years ago by ▴ 10 • written 5.8 years ago by ▴ 170
0
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0
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5.0k
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Comment: C: how to correct gene expression based on tumor purity
5.4 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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1
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2.1k
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Comment: C: Processing Whole Genome Sequencing data (shallow) and call Copy Number Variation
5.5 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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3
replies
2.1k
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Processing Whole Genome Sequencing data (shallow) and call Copy Number Variations
Whole genome sequecnig copy number variation
5.5 years ago by Alejandro Jimenez Sanchez ▴ 170
0
votes
1
reply
1.8k
views
Hyperbolic significance threshold for volcano plot
volcanoplot
5.7 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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1
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3.8k
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Comment: C: ABSOLUTE MAF error
5.7 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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2
replies
3.8k
views
Comment: C: ABSOLUTE MAF error
5.8 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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1
reply
3.8k
views
Comment: C: ABSOLUTE MAF error
5.8 years ago by Alejandro Jimenez Sanchez ▴ 170
8
votes
2
replies
3.8k
views
Install ABSOLUTE Error
ABSOLUTE R Package
updated 6.0 years ago by ▴ 60 • written 6.2 years ago by ▴ 170
0
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0
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1.1k
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Comment: C: Mapping TCGA IDs
6.0 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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2
replies
1.1k
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Mapping TCGA IDs
TCGA
updated 6.0 years ago by 129k • written 6.0 years ago by ▴ 170
0
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0
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3.4k
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Comment: C: Protein database for TCGA MAF files
6.1 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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0
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3.4k
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Comment: C: Protein database for TCGA MAF files
6.1 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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0
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3.4k
views
Comment: C: Protein database for TCGA MAF files
6.1 years ago by Alejandro Jimenez Sanchez ▴ 170
6
votes
0
replies
3.8k
views
Answer: A: Install ABSOLUTE Error
6.2 years ago by Alejandro Jimenez Sanchez ▴ 170
2
votes
6
replies
3.7k
views
Data repository for Whole Exome Sequencing
WES Database GEO
6.4 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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0
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12k
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Answer: A: Where Can I Download All Exons Of The Human Genome In Fasta Format (One Big File
6.8 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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0
replies
23k
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Answer: A: Hypergeometric Test On Gene Set
7.1 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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0
replies
1.3k
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Is it possible to include all possible gene transcripts affected by a mutations using vcf2maf?
vcf2maf
7.2 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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1
reply
19k
views
Comment: C: How to run multiple jobs with GNU parallel with multiple arguments?
7.2 years ago by Alejandro Jimenez Sanchez ▴ 170
0
votes
1
reply
19k
views
Comment: C: How to run multiple jobs with GNU parallel with multiple arguments?
7.2 years ago by Alejandro Jimenez Sanchez ▴ 170
0
votes
1
reply
19k
views
Comment: C: How to run multiple jobs with GNU parallel with multiple arguments?
7.2 years ago by Alejandro Jimenez Sanchez ▴ 170
3
votes
8
replies
19k
views
How to run multiple jobs with GNU parallel with multiple arguments?
GNU parallel
updated 7.2 years ago by ▴ 60 • written 7.2 years ago by ▴ 170
1
vote
1
reply
137k
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Comment: A: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
7.2 years ago by Alejandro Jimenez Sanchez ▴ 170
0
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1
reply
9.0k
views
Comment: C: ABSOLUTE to estimate tumour purity from WES data
7.3 years ago by Alejandro Jimenez Sanchez ▴ 170
6
votes
6
replies
9.0k
views
ABSOLUTE to estimate tumour purity from WES data
ABSOLUTE Whole Exome Sequencing Tumour Purity
updated 5 months ago by 39k • written 7.3 years ago by ▴ 170
0
votes
1
reply
4.6k
views
Comment: C: How to create B-allele frequency file for ADTEx?
7.3 years ago by Alejandro Jimenez Sanchez ▴ 170
1
vote
2
replies
4.7k
views
PyClone without copy number data
PyClone next-gen tumor_phylogeny
updated 7.5 years ago by ▴ 10 • written 7.5 years ago by ▴ 170
1
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0
replies
2.6k
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Comment: C: TCGA Mutation Annotation Files (MAFs) with ref_context column
7.9 years ago by Alejandro Jimenez Sanchez ▴ 170
3
votes
2
replies
2.6k
views
TCGA Mutation Annotation Files (MAFs) with ref_context column
MAF TCGA
updated 6 months ago by 39k • written 7.9 years ago by ▴ 170
6
votes
11
replies
3.4k
views
Protein database for TCGA MAF files
MAF TCGA
updated 5 months ago by 39k • written 8.0 years ago by ▴ 170
0
votes
0
replies
3.4k
views
Comment: Comment: Protein database for TCGA MAF files
updated 5 months ago by 39k • written 8.0 years ago by ▴ 170
0
votes
1
reply
3.4k
views
Comment: C: Protein database for TCGA MAF files
8.0 years ago by Alejandro Jimenez Sanchez ▴ 170
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