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Comment: Comment: ABSOLUTE to estimate tumour purity from WES data
updated 2.7 years ago by 45k • written 9.6 years ago by ▴ 180
1
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1
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21k
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Answer: A: Software For Hla Typing Using Ngs?
updated 5.8 years ago by 45k • written 9.8 years ago by ▴ 180
10
votes
24
replies
12k
views
10 follow
Download SAM/BAM files from SRA takes ages!!!
SRA bam
updated 6.9 years ago by ▴ 40 • written 8.2 years ago by ▴ 180
0
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0
replies
2.5k
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vcf2maf not generating `t_depth t_ref_count t_alt_count` columns in MAF file
vcf maf t_depth t_ref_count talt_count
6.9 years ago by Alejandro Jimenez Sanchez ▴ 180
10
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4
replies
7.7k
views
R phangorn phylogenetic analysis from somatic mutations' binary table
phangorn R tumour phylogeny binary table
updated 2.2 years ago by • 0 • written 9.6 years ago by ▴ 180
0
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10
replies
5.8k
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ABSOLUTE MAF error
MAF ABSOLUTE
updated 7.1 years ago by ▴ 10 • written 8.2 years ago by ▴ 180
0
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0
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6.8k
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Comment: C: how to correct gene expression based on tumor purity
7.7 years ago by Alejandro Jimenez Sanchez ▴ 180
0
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1
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2.8k
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Comment: C: Processing Whole Genome Sequencing data (shallow) and call Copy Number Variation
7.8 years ago by Alejandro Jimenez Sanchez ▴ 180
0
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3
replies
2.8k
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Processing Whole Genome Sequencing data (shallow) and call Copy Number Variations
Whole genome sequecnig copy number variation
7.8 years ago by Alejandro Jimenez Sanchez ▴ 180
0
votes
1
reply
2.5k
views
Hyperbolic significance threshold for volcano plot
volcanoplot
8.0 years ago by Alejandro Jimenez Sanchez ▴ 180
0
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1
reply
5.8k
views
Comment: C: ABSOLUTE MAF error
8.1 years ago by Alejandro Jimenez Sanchez ▴ 180
0
votes
2
replies
5.8k
views
Comment: C: ABSOLUTE MAF error
8.1 years ago by Alejandro Jimenez Sanchez ▴ 180
0
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1
reply
5.8k
views
Comment: C: ABSOLUTE MAF error
8.1 years ago by Alejandro Jimenez Sanchez ▴ 180
8
votes
2
replies
4.8k
views
Install ABSOLUTE Error
ABSOLUTE R Package
updated 8.3 years ago by ▴ 70 • written 8.5 years ago by ▴ 180
0
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0
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1.4k
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Comment: C: Mapping TCGA IDs
8.3 years ago by Alejandro Jimenez Sanchez ▴ 180
0
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2
replies
1.4k
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Mapping TCGA IDs
TCGA
updated 8.3 years ago by 153k • written 8.3 years ago by ▴ 180
0
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0
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5.1k
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Comment: C: Protein database for TCGA MAF files
8.4 years ago by Alejandro Jimenez Sanchez ▴ 180
0
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0
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5.1k
views
Comment: C: Protein database for TCGA MAF files
8.4 years ago by Alejandro Jimenez Sanchez ▴ 180
0
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0
replies
5.1k
views
Comment: C: Protein database for TCGA MAF files
8.4 years ago by Alejandro Jimenez Sanchez ▴ 180
6
votes
0
replies
4.8k
views
Answer: A: Install ABSOLUTE Error
8.5 years ago by Alejandro Jimenez Sanchez ▴ 180
2
votes
6
replies
4.9k
views
Data repository for Whole Exome Sequencing
WES Database GEO
8.7 years ago by Alejandro Jimenez Sanchez ▴ 180
0
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0
replies
16k
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Answer: A: Where Can I Download All Exons Of The Human Genome In Fasta Format (One Big File
9.1 years ago by Alejandro Jimenez Sanchez ▴ 180
0
votes
0
replies
27k
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Answer: A: Hypergeometric Test On Gene Set
9.4 years ago by Alejandro Jimenez Sanchez ▴ 180
0
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0
replies
1.7k
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Is it possible to include all possible gene transcripts affected by a mutations using vcf2maf?
vcf2maf
9.5 years ago by Alejandro Jimenez Sanchez ▴ 180
0
votes
1
reply
21k
views
Comment: C: How to run multiple jobs with GNU parallel with multiple arguments?
9.5 years ago by Alejandro Jimenez Sanchez ▴ 180
0
votes
1
reply
21k
views
Comment: C: How to run multiple jobs with GNU parallel with multiple arguments?
9.5 years ago by Alejandro Jimenez Sanchez ▴ 180
0
votes
1
reply
21k
views
Comment: C: How to run multiple jobs with GNU parallel with multiple arguments?
9.5 years ago by Alejandro Jimenez Sanchez ▴ 180
3
votes
8
replies
21k
views
How to run multiple jobs with GNU parallel with multiple arguments?
GNU parallel
updated 9.5 years ago by ▴ 60 • written 9.5 years ago by ▴ 180
1
vote
1
reply
155k
views
Comment: A: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
9.5 years ago by Alejandro Jimenez Sanchez ▴ 180
0
votes
1
reply
12k
views
Comment: C: ABSOLUTE to estimate tumour purity from WES data
9.6 years ago by Alejandro Jimenez Sanchez ▴ 180
6
votes
6
replies
12k
views
ABSOLUTE to estimate tumour purity from WES data
ABSOLUTE Whole Exome Sequencing Tumour Purity
updated 2.7 years ago by 45k • written 9.6 years ago by ▴ 180
0
votes
1
reply
5.7k
views
Comment: C: How to create B-allele frequency file for ADTEx?
9.6 years ago by Alejandro Jimenez Sanchez ▴ 180
1
vote
2
replies
5.8k
views
PyClone without copy number data
PyClone next-gen tumor_phylogeny
updated 9.8 years ago by ▴ 10 • written 9.8 years ago by ▴ 180
1
vote
0
replies
3.4k
views
Comment: C: TCGA Mutation Annotation Files (MAFs) with ref_context column
10.2 years ago by Alejandro Jimenez Sanchez ▴ 180
3
votes
2
replies
3.4k
views
TCGA Mutation Annotation Files (MAFs) with ref_context column
MAF TCGA
updated 2.9 years ago by 45k • written 10.2 years ago by ▴ 180
6
votes
11
replies
5.1k
views
Protein database for TCGA MAF files
MAF TCGA
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 180
0
votes
0
replies
5.1k
views
Comment: Comment: Protein database for TCGA MAF files
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 180
0
votes
1
reply
5.1k
views
Comment: C: Protein database for TCGA MAF files
10.3 years ago by Alejandro Jimenez Sanchez ▴ 180
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