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3
votes
6
replies
14k
views
  Error: Encountered internal Bowtie 2 exception (#1) (ERR): bowtie2-align exited with value 1
ChIP-Seq
updated 6 weeks ago by • 0 • written 4.1 years ago by ▴ 390
0
votes
1
reply
1.6k
views
  findOverlapsOfPeaks() of package ChIPpeakAnno in R
R
updated 3 months ago by • 0 • written 4.2 years ago by ▴ 390
1
vote
3
replies
885
views
  Can we compare peaks of different transcription factors when they were obtained by different criteria (IDR/FDR)?
ChIP-Seq IDR RNA-Seq
updated 3 months ago by 20 • written 2.9 years ago by ▴ 390
0
votes
1
reply
522
views
Comment:  C: Affymetrix: probeset or transcript cluster?
9 months ago by salamandra ▴ 390
0
votes
1
reply
522
views
Comment:  C: Affymetrix: probeset or transcript cluster?
9 months ago by salamandra ▴ 390
0
votes
1
reply
522
views
Comment:  C: Affymetrix: probeset or transcript cluster?
9 months ago by salamandra ▴ 390
0
votes
1
reply
522
views
Comment:  C: Affymetrix: probeset or transcript cluster?
9 months ago by salamandra ▴ 390
5
votes
8
replies
522
views
  Affymetrix: probeset or transcript cluster?
Affymetrix microarray oligo R
9 months ago by salamandra ▴ 390
2
votes
1
reply
369
views
  Summarize by gene for agilent microarray data - one color
R microarray limma
updated 9 months ago by 74k • written 9 months ago by ▴ 390
1
vote
0
replies
2.0k
views
Comment:  C: Does Gene length corrected TMM [GeTMM] violate any assumptions of TMM normalizat
13 months ago by salamandra ▴ 390
0
votes
0
replies
298
views
  Which annotation package to use to mapIds() on HuEx-1_0-st-v2 microarray platform?
microarray R bioconductor
16 months ago by salamandra ▴ 390
0
votes
1
reply
2.4k
views
Comment:  C: Human Exon array probeset to gene-level expression
19 months ago by salamandra ▴ 390
0
votes
1
reply
2.4k
views
Comment:  C: Human Exon array probeset to gene-level expression
19 months ago by salamandra ▴ 390
0
votes
1
reply
2.4k
views
Comment:  C: Human Exon array probeset to gene-level expression
19 months ago by salamandra ▴ 390
0
votes
0
replies
2.4k
views
Comment:  C: Human Exon array probeset to gene-level expression
19 months ago by salamandra ▴ 390
0
votes
1
reply
2.4k
views
Comment:  C: Human Exon array probeset to gene-level expression
19 months ago by salamandra ▴ 390
0
votes
1
reply
2.4k
views
Comment:  C: Human Exon array probeset to gene-level expression
19 months ago by salamandra ▴ 390
0
votes
1
reply
2.4k
views
Comment:  C: Human Exon array probeset to gene-level expression
20 months ago by salamandra ▴ 390
0
votes
1
reply
6.0k
views
Comment:  C: Cannot read Illumina data (.bgx and .txt format) in R for microanalysis
20 months ago by salamandra ▴ 390
0
votes
0
replies
788
views
Comment:  C: Error when reading microarray idat files from illumina
20 months ago by salamandra ▴ 390
0
votes
2
replies
788
views
  Error when reading microarray idat files from illumina
microarray illumina illuminaio R limma
updated 20 months ago by 32k • written 20 months ago by ▴ 390
0
votes
1
reply
1.1k
views
Comment:  C: Biopython installation/set path fails in conda env
22 months ago by salamandra ▴ 390
0
votes
5
replies
1.1k
views
  Biopython installation/set path fails in conda env
Biopython
22 months ago by salamandra ▴ 390
0
votes
1
reply
1.1k
views
Comment:  C: Biopython installation/set path fails in conda env
22 months ago by salamandra ▴ 390
1
vote
1
reply
888
views
  How to generate a scatter plot of duplication level vs log2reads per kilobase for RNA-seq? (seqmonk)
seqmonk Duplication level RNA-Seq
updated 24 months ago by • 0 • written 3.0 years ago by ▴ 390
9
votes
4
replies
1.8k
views
  mRNA-seq quality report (fastQC): Does it mean samples have adapters and should remove duplicates?
RNA-Seq fastqc duplicates adapters
updated 2.1 years ago by 20 • written 3.0 years ago by ▴ 390
0
votes
2
replies
2.0k
views
  Error in match.arg in boxplot - oligo package
R oligo
updated 2.1 years ago by ★ 1.6k • written 4.2 years ago by ▴ 390
9
votes
4
replies
2.8k
views
  BiomaRt: archive version of ensembl not working
biomart r
updated 2.4 years ago by ★ 1.7k • written 2.5 years ago by ▴ 390
0
votes
0
replies
2.8k
views
Comment:  C: BiomaRt: archive version of ensembl not working
2.5 years ago by salamandra ▴ 390
0
votes
1
reply
4.5k
views
Comment:  C: If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
2.5 years ago by salamandra ▴ 390
0
votes
1
reply
4.5k
views
Comment:  C: If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
2.5 years ago by salamandra ▴ 390
0
votes
1
reply
4.5k
views
Comment:  C: If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
2.5 years ago by salamandra ▴ 390
0
votes
1
reply
2.9k
views
Comment:  C: DESeq2 design formula: how to use the opposite interaction term?
2.5 years ago by salamandra ▴ 390
0
votes
0
replies
8.1k
views
Comment:  C: CPM read count normalization: what does it mean between replicates of same group
2.5 years ago by salamandra ▴ 390
6
votes
2
replies
8.1k
views
  CPM read count normalization: what does it mean between replicates of same group and within same replicate?
RNA-Seq Read count normalization
updated 2.5 years ago by 50k • written 2.5 years ago by ▴ 390
0
votes
1
reply
2.9k
views
Comment:  C: DESeq2 design formula: how to use the opposite interaction term?
2.5 years ago by salamandra ▴ 390
0
votes
0
replies
1.8k
views
  Homer: annotate peaks with ensembl annotation (.gtf) file instead of UCSC anotation file?
homer annotatePeaks.pl
2.5 years ago by salamandra ▴ 390
0
votes
1
reply
2.9k
views
Comment:  C: DESeq2 design formula: how to use the opposite interaction term?
2.5 years ago by salamandra ▴ 390
5
votes
8
replies
2.9k
views
  DESeq2 design formula: how to use the opposite interaction term?
deseq2 RNA-Seq
updated 2.5 years ago by 74k • written 2.5 years ago by ▴ 390
0
votes
1
reply
4.4k
views
Comment:  C: BioMart: connection fails
2.6 years ago by salamandra ▴ 390
0
votes
0
replies
4.4k
views
Comment:  C: BioMart: connection fails
2.6 years ago by salamandra ▴ 390
0
votes
1
reply
4.4k
views
Comment:  A: BioMart: connection fails
2.6 years ago by salamandra ▴ 390
15
votes
12
replies
4.4k
views
  BioMart: connection fails
BioMart
2.6 years ago by salamandra ▴ 390
7
votes
9
replies
3.2k
views
  How does MACS algorithm work on ATAC-seq data if there is no control sample and no model estimation?
ChIP-Seq MACS
updated 2.6 years ago by • 0 • written 3.6 years ago by ▴ 390
5
votes
2
replies
1.2k
views
  Difference between affy_hg_u133a and with_affy_hg_u133a
R Biomart
updated 2.7 years ago by 20 • written 4.2 years ago by ▴ 390
3
votes
8
replies
3.2k
views
  ValueError: invalid literal for int() with base 10: 'start' computeMatrix of deeptools
ChIP-Seq Deeptools
updated 2.8 years ago by 34k • written 4.0 years ago by ▴ 390
0
votes
0
replies
1.2k
views
  degPatterns: Error in lower.to.upper.tri.inds(n) : 'n' must be >= 2
RNA-seq clustering
2.8 years ago by salamandra ▴ 390
0
votes
0
replies
1.2k
views
Comment:  C: Tool that can split genes into groups with similar expression pattern overtime
2.8 years ago by salamandra ▴ 390
4
votes
8
replies
1.2k
views
  Tool that can split genes into groups with similar expression pattern overtime and plot them?
RNA-Seq clustering
updated 2.8 years ago by ▴ 50 • written 2.8 years ago by ▴ 390
0
votes
1
reply
1.2k
views
Comment:  C: Tool that can split genes into groups with similar expression pattern overtime
2.8 years ago by salamandra ▴ 390
213 results • Page 1 of 5
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