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2
votes
3
replies
5.2k
views
STAR alignment error: Genome_genomeGenerate.cpp:208:genomeGenerate: exiting because of *OUTPUT FILE* error: could not create output file ./GenomeDir/
RNA-Seq STAR
updated 6 weeks ago by • 0 • written 4.0 years ago by ▴ 500
0
votes
1
reply
1.7k
views
findOverlapsOfPeaks in ChIPpeakAnno R package
R ChIP-Seq
updated 3 months ago by ▴ 10 • written 5.2 years ago by ▴ 500
0
votes
0
replies
1.4k
views
Comment: Comment: MACS2: What is in 4th column of treat_pvalue.bdg/treat_qvalue.bdg files?
7 months ago by salamandra ▴ 500
4
votes
6
replies
18k
views
Error: Encountered internal Bowtie 2 exception (#1) (ERR): bowtie2-align exited with value 1
ChIP-Seq
updated 14 months ago by ▴ 10 • written 5.1 years ago by ▴ 500
0
votes
1
reply
2.0k
views
findOverlapsOfPeaks() of package ChIPpeakAnno in R
R
updated 15 months ago by • 0 • written 5.2 years ago by ▴ 500
1
vote
3
replies
1.2k
views
Can we compare peaks of different transcription factors when they were obtained by different criteria (IDR/FDR)?
ChIP-Seq IDR RNA-Seq
updated 15 months ago by 20 • written 3.9 years ago by ▴ 500
0
votes
1
reply
1.2k
views
Comment: C: Affymetrix: probeset or transcript cluster?
22 months ago by salamandra ▴ 500
0
votes
1
reply
1.2k
views
Comment: C: Affymetrix: probeset or transcript cluster?
22 months ago by salamandra ▴ 500
0
votes
1
reply
1.2k
views
Comment: C: Affymetrix: probeset or transcript cluster?
22 months ago by salamandra ▴ 500
0
votes
1
reply
1.2k
views
Comment: C: Affymetrix: probeset or transcript cluster?
22 months ago by salamandra ▴ 500
5
votes
8
replies
1.2k
views
Affymetrix: probeset or transcript cluster?
Affymetrix microarray oligo R
22 months ago by salamandra ▴ 500
2
votes
1
reply
713
views
Summarize by gene for agilent microarray data - one color
R microarray limma
updated 22 months ago by 82k • written 22 months ago by ▴ 500
1
vote
0
replies
7.5k
views
Comment: C: Does Gene length corrected TMM [GeTMM] violate any assumptions of TMM normalizat
2.1 years ago by salamandra ▴ 500
0
votes
0
replies
489
views
Which annotation package to use to mapIds() on HuEx-1_0-st-v2 microarray platform?
microarray R bioconductor
2.4 years ago by salamandra ▴ 500
0
votes
1
reply
3.7k
views
Comment: C: Human Exon array probeset to gene-level expression
2.6 years ago by salamandra ▴ 500
0
votes
1
reply
3.7k
views
Comment: C: Human Exon array probeset to gene-level expression
2.6 years ago by salamandra ▴ 500
0
votes
1
reply
3.7k
views
Comment: C: Human Exon array probeset to gene-level expression
2.6 years ago by salamandra ▴ 500
0
votes
0
replies
3.7k
views
Comment: C: Human Exon array probeset to gene-level expression
2.7 years ago by salamandra ▴ 500
0
votes
1
reply
3.7k
views
Comment: C: Human Exon array probeset to gene-level expression
2.7 years ago by salamandra ▴ 500
0
votes
1
reply
3.7k
views
Comment: C: Human Exon array probeset to gene-level expression
2.7 years ago by salamandra ▴ 500
0
votes
1
reply
3.7k
views
Comment: C: Human Exon array probeset to gene-level expression
2.7 years ago by salamandra ▴ 500
0
votes
1
reply
6.7k
views
Comment: C: Cannot read Illumina data (.bgx and .txt format) in R for microanalysis
2.7 years ago by salamandra ▴ 500
0
votes
0
replies
1.3k
views
Comment: C: Error when reading microarray idat files from illumina
2.7 years ago by salamandra ▴ 500
0
votes
2
replies
1.3k
views
Error when reading microarray idat files from illumina
microarray illumina illuminaio R limma
updated 2.7 years ago by 34k • written 2.7 years ago by ▴ 500
0
votes
1
reply
2.0k
views
Comment: C: Biopython installation/set path fails in conda env
2.9 years ago by salamandra ▴ 500
0
votes
5
replies
2.0k
views
Biopython installation/set path fails in conda env
Biopython
2.9 years ago by salamandra ▴ 500
0
votes
1
reply
2.0k
views
Comment: C: Biopython installation/set path fails in conda env
2.9 years ago by salamandra ▴ 500
1
vote
1
reply
1.2k
views
How to generate a scatter plot of duplication level vs log2reads per kilobase for RNA-seq? (seqmonk)
seqmonk Duplication level RNA-Seq
updated 3.0 years ago by • 0 • written 4.0 years ago by ▴ 500
9
votes
4
replies
2.3k
views
mRNA-seq quality report (fastQC): Does it mean samples have adapters and should remove duplicates?
RNA-Seq fastqc duplicates adapters
updated 3.1 years ago by 20 • written 4.0 years ago by ▴ 500
0
votes
2
replies
2.4k
views
Error in match.arg in boxplot - oligo package
R oligo
updated 3.1 years ago by ★ 1.6k • written 5.2 years ago by ▴ 500
14
votes
4
replies
4.1k
views
BiomaRt: archive version of ensembl not working
biomart r
updated 3.5 years ago by ★ 1.9k • written 3.5 years ago by ▴ 500
0
votes
0
replies
4.1k
views
Comment: C: BiomaRt: archive version of ensembl not working
3.5 years ago by salamandra ▴ 500
0
votes
1
reply
6.1k
views
Comment: C: If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
3.5 years ago by salamandra ▴ 500
0
votes
1
reply
6.1k
views
Comment: C: If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
3.5 years ago by salamandra ▴ 500
0
votes
1
reply
6.1k
views
Comment: C: If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
3.5 years ago by salamandra ▴ 500
0
votes
1
reply
4.4k
views
Comment: C: DESeq2 design formula: how to use the opposite interaction term?
3.5 years ago by salamandra ▴ 500
0
votes
0
replies
11k
views
Comment: C: CPM read count normalization: what does it mean between replicates of same group
3.5 years ago by salamandra ▴ 500
9
votes
2
replies
11k
views
CPM read count normalization: what does it mean between replicates of same group and within same replicate?
RNA-Seq Read count normalization
updated 3.5 years ago by 62k • written 3.5 years ago by ▴ 500
2
votes
1
reply
4.4k
views
Comment: C: DESeq2 design formula: how to use the opposite interaction term?
3.5 years ago by salamandra ▴ 500
2
votes
0
replies
2.3k
views
Homer: annotate peaks with ensembl annotation (.gtf) file instead of UCSC anotation file?
homer annotatePeaks.pl
3.5 years ago by salamandra ▴ 500
0
votes
1
reply
4.4k
views
Comment: C: DESeq2 design formula: how to use the opposite interaction term?
3.6 years ago by salamandra ▴ 500
17
votes
8
replies
4.4k
views
DESeq2 design formula: how to use the opposite interaction term?
deseq2 RNA-Seq
updated 3.6 years ago by 82k • written 3.6 years ago by ▴ 500
0
votes
1
reply
8.0k
views
Comment: C: BioMart: connection fails
3.6 years ago by salamandra ▴ 500
0
votes
0
replies
8.0k
views
Comment: C: BioMart: connection fails
3.6 years ago by salamandra ▴ 500
16
votes
12
replies
8.0k
views
BioMart: connection fails
BioMart
3.6 years ago by salamandra ▴ 500
0
votes
1
reply
8.0k
views
Comment: A: BioMart: connection fails
3.6 years ago by salamandra ▴ 500
7
votes
9
replies
4.3k
views
How does MACS algorithm work on ATAC-seq data if there is no control sample and no model estimation?
ChIP-Seq MACS
updated 3.6 years ago by • 0 • written 4.6 years ago by ▴ 500
5
votes
2
replies
1.5k
views
Difference between affy_hg_u133a and with_affy_hg_u133a
R Biomart
updated 3.8 years ago by 20 • written 5.2 years ago by ▴ 500
3
votes
8
replies
4.3k
views
ValueError: invalid literal for int() with base 10: 'start' computeMatrix of deeptools
ChIP-Seq Deeptools
updated 3.8 years ago by 36k • written 5.0 years ago by ▴ 500
0
votes
0
replies
1.4k
views
degPatterns: Error in lower.to.upper.tri.inds(n) : 'n' must be >= 2
RNA-seq clustering
3.8 years ago by salamandra ▴ 500
214 results • Page 1 of 5
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