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3
votes
9
replies
5.4k
views
ValueError: invalid literal for int() with base 10: 'start' computeMatrix of deeptools
ChIP-Seq Deeptools
updated 9 months ago by • 0 • written 5.9 years ago by ▴ 540
2
votes
3
replies
5.8k
views
STAR alignment error: Genome_genomeGenerate.cpp:208:genomeGenerate: exiting because of *OUTPUT FILE* error: could not create output file ./GenomeDir/
RNA-Seq STAR
updated 12 months ago by • 0 • written 4.9 years ago by ▴ 540
0
votes
1
reply
1.9k
views
findOverlapsOfPeaks in ChIPpeakAnno R package
R ChIP-Seq
updated 13 months ago by ▴ 10 • written 6.1 years ago by ▴ 540
0
votes
0
replies
1.7k
views
Comment: Comment: MACS2: What is in 4th column of treat_pvalue.bdg/treat_qvalue.bdg files?
18 months ago by salamandra ▴ 540
4
votes
6
replies
22k
views
Error: Encountered internal Bowtie 2 exception (#1) (ERR): bowtie2-align exited with value 1
ChIP-Seq
updated 2.1 years ago by ▴ 10 • written 6.0 years ago by ▴ 540
0
votes
1
reply
2.3k
views
findOverlapsOfPeaks() of package ChIPpeakAnno in R
R
updated 2.2 years ago by ▴ 10 • written 6.1 years ago by ▴ 540
1
vote
3
replies
1.5k
views
Can we compare peaks of different transcription factors when they were obtained by different criteria (IDR/FDR)?
ChIP-Seq IDR RNA-Seq
updated 2.2 years ago by 20 • written 4.8 years ago by ▴ 540
0
votes
1
reply
1.7k
views
Comment: C: Affymetrix: probeset or transcript cluster?
2.7 years ago by salamandra ▴ 540
0
votes
1
reply
1.7k
views
Comment: C: Affymetrix: probeset or transcript cluster?
2.7 years ago by salamandra ▴ 540
0
votes
1
reply
1.7k
views
Comment: C: Affymetrix: probeset or transcript cluster?
2.7 years ago by salamandra ▴ 540
0
votes
1
reply
1.7k
views
Comment: C: Affymetrix: probeset or transcript cluster?
2.7 years ago by salamandra ▴ 540
5
votes
8
replies
1.7k
views
Affymetrix: probeset or transcript cluster?
Affymetrix microarray oligo R
2.7 years ago by salamandra ▴ 540
2
votes
1
reply
978
views
Summarize by gene for agilent microarray data - one color
R microarray limma
updated 2.8 years ago by 85k • written 2.8 years ago by ▴ 540
2
votes
0
replies
12k
views
Comment: C: Does Gene length corrected TMM [GeTMM] violate any assumptions of TMM normalizat
3.0 years ago by salamandra ▴ 540
0
votes
1
reply
4.7k
views
Comment: C: Human Exon array probeset to gene-level expression
3.5 years ago by salamandra ▴ 540
0
votes
1
reply
4.7k
views
Comment: C: Human Exon array probeset to gene-level expression
3.5 years ago by salamandra ▴ 540
0
votes
1
reply
4.7k
views
Comment: C: Human Exon array probeset to gene-level expression
3.5 years ago by salamandra ▴ 540
0
votes
0
replies
4.7k
views
Comment: C: Human Exon array probeset to gene-level expression
3.6 years ago by salamandra ▴ 540
0
votes
1
reply
4.7k
views
Comment: C: Human Exon array probeset to gene-level expression
3.6 years ago by salamandra ▴ 540
0
votes
1
reply
4.7k
views
Comment: C: Human Exon array probeset to gene-level expression
3.6 years ago by salamandra ▴ 540
0
votes
1
reply
4.7k
views
Comment: C: Human Exon array probeset to gene-level expression
3.6 years ago by salamandra ▴ 540
0
votes
1
reply
7.2k
views
Comment: C: Cannot read Illumina data (.bgx and .txt format) in R for microanalysis
3.6 years ago by salamandra ▴ 540
0
votes
0
replies
1.6k
views
Comment: C: Error when reading microarray idat files from illumina
3.6 years ago by salamandra ▴ 540
0
votes
2
replies
1.6k
views
Error when reading microarray idat files from illumina
microarray illumina illuminaio R limma
updated 3.6 years ago by 34k • written 3.6 years ago by ▴ 540
0
votes
1
reply
2.7k
views
Comment: C: Biopython installation/set path fails in conda env
3.8 years ago by salamandra ▴ 540
1
vote
5
replies
2.7k
views
Biopython installation/set path fails in conda env
Biopython
3.8 years ago by salamandra ▴ 540
0
votes
1
reply
2.7k
views
Comment: C: Biopython installation/set path fails in conda env
3.8 years ago by salamandra ▴ 540
1
vote
1
reply
1.4k
views
How to generate a scatter plot of duplication level vs log2reads per kilobase for RNA-seq? (seqmonk)
seqmonk Duplication level RNA-Seq
updated 3.9 years ago by • 0 • written 4.9 years ago by ▴ 540
9
votes
4
replies
2.6k
views
mRNA-seq quality report (fastQC): Does it mean samples have adapters and should remove duplicates?
RNA-Seq fastqc duplicates adapters
updated 4.0 years ago by 20 • written 4.9 years ago by ▴ 540
0
votes
2
replies
2.7k
views
Error in match.arg in boxplot - oligo package
R oligo
updated 4.0 years ago by ★ 1.6k • written 6.1 years ago by ▴ 540
14
votes
4
replies
5.2k
views
BiomaRt: archive version of ensembl not working
biomart r
updated 4.4 years ago by ★ 2.0k • written 4.4 years ago by ▴ 540
0
votes
0
replies
5.2k
views
Comment: C: BiomaRt: archive version of ensembl not working
4.4 years ago by salamandra ▴ 540
0
votes
1
reply
7.5k
views
Comment: C: If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
4.4 years ago by salamandra ▴ 540
0
votes
1
reply
7.5k
views
Comment: C: If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
4.4 years ago by salamandra ▴ 540
0
votes
1
reply
7.5k
views
Comment: C: If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
4.4 years ago by salamandra ▴ 540
0
votes
1
reply
6.2k
views
Comment: C: DESeq2 design formula: how to use the opposite interaction term?
4.4 years ago by salamandra ▴ 540
0
votes
0
replies
14k
views
Comment: C: CPM read count normalization: what does it mean between replicates of same group
4.4 years ago by salamandra ▴ 540
9
votes
2
replies
14k
views
CPM read count normalization: what does it mean between replicates of same group and within same replicate?
RNA-Seq Read count normalization
updated 4.4 years ago by 72k • written 4.4 years ago by ▴ 540
2
votes
1
reply
6.2k
views
Comment: C: DESeq2 design formula: how to use the opposite interaction term?
4.4 years ago by salamandra ▴ 540
0
votes
1
reply
6.2k
views
Comment: C: DESeq2 design formula: how to use the opposite interaction term?
4.5 years ago by salamandra ▴ 540
20
votes
8
replies
6.2k
views
DESeq2 design formula: how to use the opposite interaction term?
deseq2 RNA-Seq
updated 4.5 years ago by 85k • written 4.5 years ago by ▴ 540
0
votes
1
reply
11k
views
Comment: C: BioMart: connection fails
4.5 years ago by salamandra ▴ 540
0
votes
0
replies
11k
views
Comment: C: BioMart: connection fails
4.5 years ago by salamandra ▴ 540
16
votes
12
replies
11k
views
BioMart: connection fails
BioMart
4.5 years ago by salamandra ▴ 540
0
votes
1
reply
11k
views
Comment: A: BioMart: connection fails
4.5 years ago by salamandra ▴ 540
8
votes
9
replies
4.9k
views
How does MACS algorithm work on ATAC-seq data if there is no control sample and no model estimation?
ChIP-Seq MACS
updated 4.6 years ago by • 0 • written 5.5 years ago by ▴ 540
5
votes
2
replies
1.7k
views
Difference between affy_hg_u133a and with_affy_hg_u133a
R Biomart
updated 4.7 years ago by 20 • written 6.1 years ago by ▴ 540
0
votes
0
replies
2.1k
views
Comment: C: Tool that can split genes into groups with similar expression pattern overtime
4.8 years ago by salamandra ▴ 540
4
votes
8
replies
2.1k
views
Tool that can split genes into groups with similar expression pattern overtime and plot them?
RNA-Seq clustering
updated 4.8 years ago by ▴ 60 • written 4.8 years ago by ▴ 540
0
votes
1
reply
2.1k
views
Comment: C: Tool that can split genes into groups with similar expression pattern overtime
4.8 years ago by salamandra ▴ 540
211 results • Page 1 of 5
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