Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
all
7
votes
5
replies
3.6k
views
What is chr EBV in human sam file?
SAM
Bowtie2
written 6.4 years ago by
salamandra
▴ 550
4
votes
9
replies
6.7k
views
ValueError: invalid literal for int() with base 10: 'start' computeMatrix of deeptools
ChIP-Seq
Deeptools
updated 2.3 years ago by
ronaldgevern
• 0 • written 7.5 years ago by
salamandra
▴ 550
2
votes
3
replies
6.4k
views
STAR alignment error: Genome_genomeGenerate.cpp:208:genomeGenerate: exiting because of *OUTPUT FILE* error: could not create output file ./GenomeDir/
RNA-Seq
STAR
updated 2.6 years ago by
xsmailstop-sub
• 0 • written 6.4 years ago by
salamandra
▴ 550
0
votes
1
reply
2.5k
views
findOverlapsOfPeaks in ChIPpeakAnno R package
R
ChIP-Seq
updated 2.7 years ago by
cvenkat95
▴ 10 • written 7.7 years ago by
salamandra
▴ 550
0
votes
0
replies
2.0k
views
Comment:
Comment: MACS2: What is in 4th column of treat_pvalue.bdg/treat_qvalue.bdg files?
3.1 years ago by
salamandra
▴ 550
5
votes
6
replies
27k
views
Error: Encountered internal Bowtie 2 exception (#1) (ERR): bowtie2-align exited with value 1
ChIP-Seq
updated 3.6 years ago by
Levin
▴ 20 • written 7.5 years ago by
salamandra
▴ 550
0
votes
1
reply
2.7k
views
findOverlapsOfPeaks() of package ChIPpeakAnno in R
R
updated 3.7 years ago by
hukai916
▴ 10 • written 7.7 years ago by
salamandra
▴ 550
1
vote
3
replies
2.0k
views
Can we compare peaks of different transcription factors when they were obtained by different criteria (IDR/FDR)?
ChIP-Seq
IDR
RNA-Seq
updated 3.7 years ago by
Biostar
20 • written 6.4 years ago by
salamandra
▴ 550
0
votes
1
reply
2.8k
views
Comment:
C: Affymetrix: probeset or transcript cluster?
4.3 years ago by
salamandra
▴ 550
0
votes
1
reply
2.8k
views
Comment:
C: Affymetrix: probeset or transcript cluster?
4.3 years ago by
salamandra
▴ 550
0
votes
1
reply
2.8k
views
Comment:
C: Affymetrix: probeset or transcript cluster?
4.3 years ago by
salamandra
▴ 550
0
votes
1
reply
2.8k
views
Comment:
C: Affymetrix: probeset or transcript cluster?
4.3 years ago by
salamandra
▴ 550
5
votes
8
replies
2.8k
views
Affymetrix: probeset or transcript cluster?
Affymetrix
microarray
oligo
R
4.3 years ago by
salamandra
▴ 550
2
votes
1
reply
1.3k
views
Summarize by gene for agilent microarray data - one color
R
microarray
limma
updated 4.3 years ago by
Kevin Blighe
88k • written 4.3 years ago by
salamandra
▴ 550
2
votes
0
replies
13k
views
Comment:
C: Does Gene length corrected TMM [GeTMM] violate any assumptions of TMM normalizat
4.6 years ago by
salamandra
▴ 550
0
votes
1
reply
7.2k
views
Comment:
C: Human Exon array probeset to gene-level expression
5.1 years ago by
salamandra
▴ 550
0
votes
1
reply
7.2k
views
Comment:
C: Human Exon array probeset to gene-level expression
5.1 years ago by
salamandra
▴ 550
0
votes
1
reply
7.2k
views
Comment:
C: Human Exon array probeset to gene-level expression
5.1 years ago by
salamandra
▴ 550
0
votes
0
replies
7.2k
views
Comment:
C: Human Exon array probeset to gene-level expression
5.1 years ago by
salamandra
▴ 550
0
votes
1
reply
7.2k
views
Comment:
C: Human Exon array probeset to gene-level expression
5.1 years ago by
salamandra
▴ 550
0
votes
1
reply
7.2k
views
Comment:
C: Human Exon array probeset to gene-level expression
5.1 years ago by
salamandra
▴ 550
0
votes
1
reply
7.2k
views
Comment:
C: Human Exon array probeset to gene-level expression
5.1 years ago by
salamandra
▴ 550
0
votes
1
reply
8.1k
views
Comment:
C: Cannot read Illumina data (.bgx and .txt format) in R for microanalysis
5.1 years ago by
salamandra
▴ 550
0
votes
0
replies
2.1k
views
Comment:
C: Error when reading microarray idat files from illumina
5.1 years ago by
salamandra
▴ 550
0
votes
2
replies
2.1k
views
Error when reading microarray idat files from illumina
microarray
illumina
illuminaio
R
limma
updated 5.1 years ago by
h.mon
35k • written 5.1 years ago by
salamandra
▴ 550
0
votes
1
reply
3.6k
views
Comment:
C: Biopython installation/set path fails in conda env
5.3 years ago by
salamandra
▴ 550
1
vote
5
replies
3.6k
views
Biopython installation/set path fails in conda env
Biopython
5.3 years ago by
salamandra
▴ 550
0
votes
1
reply
3.6k
views
Comment:
C: Biopython installation/set path fails in conda env
5.3 years ago by
salamandra
▴ 550
1
vote
1
reply
1.8k
views
How to generate a scatter plot of duplication level vs log2reads per kilobase for RNA-seq? (seqmonk)
seqmonk
Duplication level
RNA-Seq
updated 5.4 years ago by
Andrei Poplaukhin
• 0 • written 6.4 years ago by
salamandra
▴ 550
9
votes
4
replies
3.4k
views
mRNA-seq quality report (fastQC): Does it mean samples have adapters and should remove duplicates?
RNA-Seq
fastqc
duplicates
adapters
updated 5.6 years ago by
Biostar
20 • written 6.5 years ago by
salamandra
▴ 550
0
votes
2
replies
3.3k
views
Error in match.arg in boxplot - oligo package
R
oligo
updated 5.6 years ago by
Satyajeet Khare
★ 1.6k • written 7.7 years ago by
salamandra
▴ 550
14
votes
4
replies
6.8k
views
BiomaRt: archive version of ensembl not working
biomart
r
updated 5.9 years ago by
Mike Smith
★ 2.1k • written 5.9 years ago by
salamandra
▴ 550
0
votes
0
replies
6.8k
views
Comment:
C: BiomaRt: archive version of ensembl not working
5.9 years ago by
salamandra
▴ 550
0
votes
1
reply
9.7k
views
Comment:
C: If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
5.9 years ago by
salamandra
▴ 550
0
votes
1
reply
9.7k
views
Comment:
C: If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
5.9 years ago by
salamandra
▴ 550
0
votes
1
reply
9.7k
views
Comment:
C: If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
5.9 years ago by
salamandra
▴ 550
0
votes
1
reply
8.8k
views
Comment:
C: DESeq2 design formula: how to use the opposite interaction term?
5.9 years ago by
salamandra
▴ 550
0
votes
0
replies
17k
views
Comment:
C: CPM read count normalization: what does it mean between replicates of same group
5.9 years ago by
salamandra
▴ 550
9
votes
2
replies
17k
views
CPM read count normalization: what does it mean between replicates of same group and within same replicate?
RNA-Seq
Read count normalization
updated 5.9 years ago by
ATpoint
85k • written 5.9 years ago by
salamandra
▴ 550
2
votes
1
reply
8.8k
views
Comment:
C: DESeq2 design formula: how to use the opposite interaction term?
5.9 years ago by
salamandra
▴ 550
0
votes
1
reply
8.8k
views
Comment:
C: DESeq2 design formula: how to use the opposite interaction term?
6.0 years ago by
salamandra
▴ 550
20
votes
8
replies
8.8k
views
DESeq2 design formula: how to use the opposite interaction term?
deseq2
RNA-Seq
updated 6.0 years ago by
Kevin Blighe
88k • written 6.0 years ago by
salamandra
▴ 550
0
votes
1
reply
15k
views
Comment:
C: BioMart: connection fails
6.1 years ago by
salamandra
▴ 550
0
votes
0
replies
15k
views
Comment:
C: BioMart: connection fails
6.1 years ago by
salamandra
▴ 550
0
votes
1
reply
15k
views
Comment:
A: BioMart: connection fails
6.1 years ago by
salamandra
▴ 550
16
votes
12
replies
15k
views
BioMart: connection fails
BioMart
6.1 years ago by
salamandra
▴ 550
8
votes
9
replies
6.1k
views
How does MACS algorithm work on ATAC-seq data if there is no control sample and no model estimation?
ChIP-Seq
MACS
updated 6.1 years ago by
jihed.chouaref
• 0 • written 7.1 years ago by
salamandra
▴ 550
5
votes
2
replies
2.2k
views
Difference between affy_hg_u133a and with_affy_hg_u133a
R
Biomart
updated 6.2 years ago by
Biostar
20 • written 7.7 years ago by
salamandra
▴ 550
0
votes
0
replies
2.9k
views
Comment:
C: Tool that can split genes into groups with similar expression pattern overtime
6.3 years ago by
salamandra
▴ 550
4
votes
8
replies
2.9k
views
Tool that can split genes into groups with similar expression pattern overtime and plot them?
RNA-Seq
clustering
updated 6.3 years ago by
exin
▴ 60 • written 6.3 years ago by
salamandra
▴ 550
211 results • Page
1 of 5
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6