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1.8k
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Comment: C: from coordinate to motif
7.2 years ago by Prakash ★ 2.2k
0
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0
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2.8k
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Answer: A: Can renaming, copying, or moving the omics data file corrupt it?
7.2 years ago by Prakash ★ 2.2k
1
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1
reply
2.7k
views
Answer: A: Ranking of Bioinformatics tools & resources by the number of users
7.2 years ago by Prakash ★ 2.2k
1
vote
1
reply
4.3k
views
Comment: C: How to do differential peak analysis after scaling BAM files
7.2 years ago by Prakash ★ 2.2k
0
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1
reply
4.3k
views
Comment: C: How to do differential peak analysis after scaling BAM files
7.2 years ago by Prakash ★ 2.2k
0
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0
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2.5k
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Comment: C: Multiple transcripts for same gene in array gene expression profile?
7.2 years ago by Prakash ★ 2.2k
0
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1
reply
1.9k
views
Comment: C: Correlation of TF Binding with expression data
7.2 years ago by Prakash ★ 2.2k
1
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3
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1.9k
views
Correlation of TF Binding with expression data
ChIP-Seq RNA-Seq
updated 7.2 years ago by 7.1k • written 7.2 years ago by ★ 2.2k
0
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0
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1.6k
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Answer: A: annotatePeaks.pl without annotation in genes name
7.2 years ago by Prakash ★ 2.2k
1
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0
replies
2.4k
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Comment: C: Connect gene names to GO terms/function for loading in DESeq2
7.3 years ago by Prakash ★ 2.2k
1
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1
reply
2.4k
views
Answer: A: Connect gene names to GO terms/function for loading in DESeq2
7.3 years ago by Prakash ★ 2.2k
1
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0
replies
3.1k
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Answer: A: hierarchical clustering heat map to RNAseq data
7.3 years ago by Prakash ★ 2.2k
1
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0
replies
2.7k
views
Comment: A: GSEA top genes vs all platform
7.3 years ago by Prakash ★ 2.2k
0
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0
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13k
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Answer: A: How to convert transcript level TPM to gene level TPM ?
7.3 years ago by Prakash ★ 2.2k
0
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0
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2.6k
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Comment: C: Bedsect: An integrated web server application to perform intersection, visualiza
7.3 years ago by Prakash ★ 2.2k
7
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2
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2.6k
views
Tool: Bedsect: An integrated web server application to perform intersection, visualization and functional annotation of genomic regions from multiple datas…
next-gen ChIP-Seq
updated 2.4 years ago by 45k • written 7.3 years ago by ★ 2.2k
1
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1
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4.6k
views
Answer: A: Delta z score between control and treatment
7.3 years ago by Prakash ★ 2.2k
2
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4
replies
2.2k
views
Module- Triat relationship in WGCNA
RNA-Seq
updated 2.4 years ago by 45k • written 7.3 years ago by ★ 2.2k
1
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0
replies
21k
views
Answer: A: duplicate 'row.names' are not allowed
7.4 years ago by Prakash ★ 2.2k
0
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1
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8.8k
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Answer: A: Picard MarkDuplicates flag vs remove issue
7.4 years ago by Prakash ★ 2.2k
1
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0
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2.8k
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Answer: A: HOMER annotatePeaks.pl 'Unique Peak ID' in first column changed in output file
7.4 years ago by Prakash ★ 2.2k
0
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0
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1.6k
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Answer: A: The chip-seq binding sites of POLR2B indicate the PoII pause there
7.6 years ago by Prakash ★ 2.2k
0
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1
reply
2.1k
views
RNAseq and ChIPseq integration
RNA-Seq ChIP-Seq
7.7 years ago by Prakash ★ 2.2k
0
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0
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4.6k
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Comment: C: how to subset sequences based on IDs, but order shall remain preserved?
7.8 years ago by Prakash ★ 2.2k
0
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3
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4.6k
views
Answer: A: how to subset sequences based on IDs, but order shall remain preserved?
7.8 years ago by Prakash ★ 2.2k
0
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0
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4.6k
views
Comment: C: how to subset sequences based on IDs, but order shall remain preserved?
7.8 years ago by Prakash ★ 2.2k
0
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1
reply
1.4k
views
Comment: C: Cufflinks analysis for transcriptome assembly
7.8 years ago by Prakash ★ 2.2k
0
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0
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4.6k
views
Comment: C: how to subset sequences based on IDs, but order shall remain preserved?
7.8 years ago by Prakash ★ 2.2k
0
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1
reply
4.6k
views
Comment: C: how to subset sequences based on IDs, but order shall remain preserved?
7.8 years ago by Prakash ★ 2.2k
0
votes
1
reply
4.6k
views
Comment: C: how to subset sequences based on IDs, but order shall remain preserved?
7.8 years ago by Prakash ★ 2.2k
0
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0
replies
1.9k
views
Answer: A: What is my total number of genes in a hypergeometic distribution test?
7.8 years ago by Prakash ★ 2.2k
1
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0
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6.7k
views
Answer: A: Doing GSEA analysis on a set of genes
8.0 years ago by Prakash ★ 2.2k
1
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1
reply
3.9k
views
Comment: C: how to keep column 6 (normalized tag count) in peaks.txt file called by Homer ca
8.0 years ago by Prakash ★ 2.2k
1
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1
reply
3.9k
views
Comment: C: how to keep column 6 (normalized tag count) in peaks.txt file called by Homer ca
8.0 years ago by Prakash ★ 2.2k
14
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3
replies
33k
views
Answer: A: Gene Set Enrichment Analysis after DESeq2
8.0 years ago by Prakash ★ 2.2k
4
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1
reply
3.9k
views
Answer: A: how to keep column 6 (normalized tag count) in peaks.txt file called by Homer ca
8.0 years ago by Prakash ★ 2.2k
0
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0
replies
4.1k
views
Comment: C: Motif database of choice
8.2 years ago by Prakash ★ 2.2k
0
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1
reply
5.4k
views
Comment: A: Nomalize chip-seq data
8.2 years ago by Prakash ★ 2.2k
1
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0
replies
2.3k
views
Answer: A: Explanation of BETA output
8.2 years ago by Prakash ★ 2.2k
1
vote
1
reply
9.5k
views
Answer: A: How to find out whether Chip-seq peaks falls within promoter or enhancer region
8.2 years ago by Prakash ★ 2.2k
0
votes
1
reply
4.7k
views
Answer: A: Cuffnorm: which output file should I use
8.2 years ago by Prakash ★ 2.2k
3
votes
4
replies
6.5k
views
Samtools rmdup and Piccard Markduplicates
alignment next-gen
updated 8.2 years ago by 5.9k • written 8.2 years ago by ★ 2.2k
0
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0
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6.5k
views
Comment: C: Samtools rmdup and Piccard Markduplicates
8.2 years ago by Prakash ★ 2.2k
1
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1
reply
3.4k
views
Comment: C: PCR duplicates in RNASeq
8.2 years ago by Prakash ★ 2.2k
6
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3
replies
3.4k
views
PCR duplicates in RNASeq
RNA-Seq
updated 2.5 years ago by 45k • written 8.2 years ago by ★ 2.2k
0
votes
1
reply
1.6k
views
Different FPKM values for same condition form cufflink
RNA-Seq
updated 9.1 years ago by 154k • written 9.1 years ago by ★ 2.2k
1
vote
2
replies
3.4k
views
Finding instances of motifs near peaks
ChIP-Seq
updated 3.2 years ago by 45k • written 10.0 years ago by ★ 2.2k
0
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2
replies
4.5k
views
Comment: C: how to get p value for a set of fdr value
10.1 years ago by Prakash ★ 2.2k
8
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14
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4.5k
views
how to get p value for a set of fdr value
fdr correlation
updated 3.2 years ago by 45k • written 10.1 years ago by ★ 2.2k
0
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0
replies
4.5k
views
Comment: Comment: how to get p value for a set of fdr value
updated 3.2 years ago by 45k • written 10.1 years ago by ★ 2.2k
153 results • Page 3 of 4
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