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11k
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Comment: C: Limma Contrast matrix
updated 5.8 years ago by 45k • written 10.0 years ago by ▴ 790
0
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0
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1.2k
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Perform correlation analysis between miRNA and mRNA expression data with different transformation values for the same samples
correlation analysis TCGA miRNA RNA-Seq
6.4 years ago by svlachavas ▴ 790
0
votes
0
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7.4k
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Comment: C: Appropriate bed files from library capture kit for computing on target coverage
6.7 years ago by svlachavas ▴ 790
0
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1
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7.4k
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Comment: C: Appropriate bed files from library capture kit for computing on target coverage
6.7 years ago by svlachavas ▴ 790
7
votes
8
replies
7.4k
views
Appropriate bed files from library capture kit for computing on target coverage of WES bam files with Picard and CollectHsMetrics
NGS bam Picard WES
updated 15 months ago by 45k • written 6.8 years ago by ▴ 790
0
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0
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7.4k
views
Comment: C: Appropriate bed files from library capture kit for computing on target coverage
6.7 years ago by svlachavas ▴ 790
0
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1
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2.0k
views
Comment: C: Group/Cluster tumor samples in an RNA-Seq dataset for survival analysis, based o
6.9 years ago by svlachavas ▴ 790
3
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3
replies
2.0k
views
Group/Cluster tumor samples in an RNA-Seq dataset for survival analysis, based on the expression of a small gene signature
RNA-Seq gene signature survival clustering R
updated 7.0 years ago by 89k • written 7.0 years ago by ▴ 790
0
votes
0
replies
2.4k
views
Appropriate explanation of function resamples and diff comparing resampling distributions of 3 different training models with caret in R
caret machine learning R microarrays
updated 7.0 years ago by 20 • written 7.9 years ago by ▴ 790
6
votes
6
replies
3.1k
views
Download latest reference genome assembly for exome sequencing alignment and variant calling
reference genome dna sequence alignment
updated 7.1 years ago by 20 • written 7.2 years ago by ▴ 790
0
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0
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2.1k
views
Comment: C: Quality control issues for mRNA sequencing fastq files based on FastQC, based on
7.2 years ago by svlachavas ▴ 790
0
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1
reply
2.1k
views
Comment: C: Quality control issues for mRNA sequencing fastq files based on FastQC, based on
7.2 years ago by svlachavas ▴ 790
3
votes
8
replies
2.1k
views
Quality control issues for mRNA sequencing fastq files based on FastQC, based on Per Base Sequence Content
fastqc mRNAsequencing RNA-Seq sequence
updated 7.2 years ago by 48k • written 7.2 years ago by ▴ 790
0
votes
1
reply
2.1k
views
Comment: C: Quality control issues for mRNA sequencing fastq files based on FastQC, based on
7.2 years ago by svlachavas ▴ 790
0
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0
replies
4.8k
views
Comment: C: customized clusterAlg of NMF in consensusClusterPlus
7.2 years ago by svlachavas ▴ 790
0
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0
replies
4.8k
views
Comment: C: Implementation of the COSMIC database for somatic variant annotation and filteri
7.2 years ago by svlachavas ▴ 790
0
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1
reply
4.8k
views
Comment: C: Implementation of the COSMIC database for somatic variant annotation and filteri
7.2 years ago by svlachavas ▴ 790
4
votes
5
replies
4.8k
views
Implementation of the COSMIC database for somatic variant annotation and filtering pipeline for WES cancer data
somatic variants COSMIC variant annotation WES
7.2 years ago by svlachavas ▴ 790
0
votes
0
replies
3.1k
views
Comment: C: Download latest reference genome assembly for exome sequencing alignment and var
7.2 years ago by svlachavas ▴ 790
0
votes
0
replies
3.1k
views
Comment: C: Download latest reference genome assembly for exome sequencing alignment and var
7.2 years ago by svlachavas ▴ 790
0
votes
1
reply
3.1k
views
Comment: C: Download latest reference genome assembly for exome sequencing alignment and var
7.2 years ago by svlachavas ▴ 790
2
votes
1
reply
3.0k
views
Answer: A: Find Information about TCGA samples from GDC data portal
7.3 years ago by svlachavas ▴ 790
5
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0
replies
8.2k
views
Answer: A: Subsetting a RangedSummarizedExperiment in R
7.3 years ago by svlachavas ▴ 790
0
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0
replies
5.7k
views
Comment: C: dbSNP annotation database and appropriate filtering in somatic variant calling p
7.3 years ago by svlachavas ▴ 790
2
votes
1
reply
5.4k
views
Comment: A: TCGAbiolinks TCGA-BRCA RNA-seq clinical data
7.3 years ago by svlachavas ▴ 790
0
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1
reply
5.2k
views
Comment: C: Differences between RTCGA and TCGAbiolinks data
7.3 years ago by svlachavas ▴ 790
0
votes
1
reply
5.7k
views
Comment: C: dbSNP annotation database and appropriate filtering in somatic variant calling p
7.3 years ago by svlachavas ▴ 790
0
votes
1
reply
5.7k
views
Comment: C: dbSNP annotation database and appropriate filtering in somatic variant calling p
7.3 years ago by svlachavas ▴ 790
0
votes
1
reply
5.7k
views
Comment: C: dbSNP annotation database and appropriate filtering in somatic variant calling p
7.3 years ago by svlachavas ▴ 790
8
votes
8
replies
5.7k
views
dbSNP annotation database and appropriate filtering in somatic variant calling pipelines
dbSNP variant filtering somatic variant calling
updated 7.3 years ago by 89k • written 7.3 years ago by ▴ 790
1
vote
1
reply
5.2k
views
Comment: C: Differences between RTCGA and TCGAbiolinks data
7.3 years ago by svlachavas ▴ 790
3
votes
1
reply
5.2k
views
Answer: A: Differences between RTCGA and TCGAbiolinks data
7.3 years ago by svlachavas ▴ 790
0
votes
1
reply
16k
views
Comment: C: Implement p-values and significance levels in boxplots for more of two groups wi
7.4 years ago by svlachavas ▴ 790
0
votes
1
reply
16k
views
Comment: C: Implement p-values and significance levels in boxplots for more of two groups wi
7.4 years ago by svlachavas ▴ 790
0
votes
1
reply
1.8k
views
Comment: C: Appropriate methodologies of comparing whole exome sequencing data between circu
7.4 years ago by svlachavas ▴ 790
1
vote
3
replies
1.8k
views
Appropriate methodologies of comparing whole exome sequencing data between circulating tumor cells and biopsies from the same set of patients
exome sequencing variant annotation mutations
7.4 years ago by svlachavas ▴ 790
1
vote
1
reply
3.6k
views
Comment: C: extract TCGA data
updated 7.4 years ago by 45k • written 7.4 years ago by ▴ 790
1
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0
replies
3.6k
views
Answer: A: extract TCGA data
7.4 years ago by svlachavas ▴ 790
0
votes
0
replies
1.1k
views
Answer: A: Data set to perform DGE
7.4 years ago by svlachavas ▴ 790
2
votes
2
replies
10k
views
Comment: C: Samples with same TCGA barcode in TCGA data
7.4 years ago by svlachavas ▴ 790
0
votes
1
reply
10k
views
Comment: C: Samples with same TCGA barcode in TCGA data
7.4 years ago by svlachavas ▴ 790
3
votes
1
reply
10k
views
Answer: A: Samples with same TCGA barcode in TCGA data
7.4 years ago by svlachavas ▴ 790
0
votes
1
reply
16k
views
Comment: C: Implement p-values and significance levels in boxplots for more of two groups wi
7.4 years ago by svlachavas ▴ 790
0
votes
0
replies
16k
views
Comment: C: Implement p-values and significance levels in boxplots for more of two groups wi
7.5 years ago by svlachavas ▴ 790
9
votes
11
replies
16k
views
Implement p-values and significance levels in boxplots for more of two groups with ggplot2 in R concerning RNA-Seq gene expression data
boxplot R RNA-Seq ggplot2
updated 4.1 years ago by 89k • written 7.5 years ago by ▴ 790
0
votes
0
replies
3.5k
views
Comment: C: Dissimilarity measure for computing similarity between categorical variables in
7.5 years ago by svlachavas ▴ 790
0
votes
0
replies
3.5k
views
Comment: C: Dissimilarity measure for computing similarity between categorical variables in
7.5 years ago by svlachavas ▴ 790
0
votes
2
replies
3.5k
views
Comment: C: Dissimilarity measure for computing similarity between categorical variables in
7.5 years ago by svlachavas ▴ 790
5
votes
6
replies
3.5k
views
Dissimilarity measure for computing similarity between categorical variables in R
R clustering similarity categorical features
7.5 years ago by svlachavas ▴ 790
1
vote
1
reply
4.4k
views
Answer: A: conversion of data.frame object to SummarizedExperiment object
7.5 years ago by svlachavas ▴ 790
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