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9.1k
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Comment: C: Limma Contrast matrix
updated 4.5 years ago by 43k • written 8.6 years ago by ▴ 790
0
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0
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1.1k
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Perform correlation analysis between miRNA and mRNA expression data with different transformation values for the same samples
correlation analysis TCGA miRNA RNA-Seq
5.0 years ago by svlachavas ▴ 790
0
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0
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5.8k
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Comment: C: Appropriate bed files from library capture kit for computing on target coverage
5.4 years ago by svlachavas ▴ 790
0
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1
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5.8k
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Comment: C: Appropriate bed files from library capture kit for computing on target coverage
5.4 years ago by svlachavas ▴ 790
7
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8
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5.8k
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Appropriate bed files from library capture kit for computing on target coverage of WES bam files with Picard and CollectHsMetrics
NGS WES Picard bam
updated 13 months ago by 43k • written 5.4 years ago by ▴ 790
0
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0
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5.8k
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Comment: C: Appropriate bed files from library capture kit for computing on target coverage
5.4 years ago by svlachavas ▴ 790
0
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1
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1.7k
views
Comment: C: Group/Cluster tumor samples in an RNA-Seq dataset for survival analysis, based o
5.6 years ago by svlachavas ▴ 790
3
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3
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1.7k
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Group/Cluster tumor samples in an RNA-Seq dataset for survival analysis, based on the expression of a small gene signature
RNA-Seq gene signature survival clustering R
updated 5.6 years ago by 87k • written 5.6 years ago by ▴ 790
0
votes
0
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2.1k
views
Appropriate explanation of function resamples and diff comparing resampling distributions of 3 different training models with caret in R
caret machine learning R microarrays
updated 5.6 years ago by 20 • written 6.5 years ago by ▴ 790
6
votes
6
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2.5k
views
Download latest reference genome assembly for exome sequencing alignment and variant calling
reference genome dna sequence alignment
updated 5.8 years ago by 20 • written 5.9 years ago by ▴ 790
0
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0
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1.4k
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Comment: C: Quality control issues for mRNA sequencing fastq files based on FastQC, based on
5.8 years ago by svlachavas ▴ 790
0
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1
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1.4k
views
Comment: C: Quality control issues for mRNA sequencing fastq files based on FastQC, based on
5.8 years ago by svlachavas ▴ 790
3
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8
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1.4k
views
Quality control issues for mRNA sequencing fastq files based on FastQC, based on Per Base Sequence Content
fastqc mRNAsequencing RNA-Seq sequence
updated 5.8 years ago by 47k • written 5.8 years ago by ▴ 790
0
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1
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1.4k
views
Comment: C: Quality control issues for mRNA sequencing fastq files based on FastQC, based on
5.8 years ago by svlachavas ▴ 790
0
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0
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4.1k
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Comment: C: customized clusterAlg of NMF in consensusClusterPlus
5.8 years ago by svlachavas ▴ 790
0
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0
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3.7k
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Comment: C: Implementation of the COSMIC database for somatic variant annotation and filteri
5.8 years ago by svlachavas ▴ 790
0
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1
reply
3.7k
views
Comment: C: Implementation of the COSMIC database for somatic variant annotation and filteri
5.8 years ago by svlachavas ▴ 790
4
votes
5
replies
3.7k
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Implementation of the COSMIC database for somatic variant annotation and filtering pipeline for WES cancer data
somatic variants COSMIC variant annotation WES
5.8 years ago by svlachavas ▴ 790
0
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0
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2.5k
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Comment: C: Download latest reference genome assembly for exome sequencing alignment and var
5.9 years ago by svlachavas ▴ 790
0
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0
replies
2.5k
views
Comment: C: Download latest reference genome assembly for exome sequencing alignment and var
5.9 years ago by svlachavas ▴ 790
0
votes
1
reply
2.5k
views
Comment: C: Download latest reference genome assembly for exome sequencing alignment and var
5.9 years ago by svlachavas ▴ 790
2
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1
reply
2.5k
views
Answer: A: Find Information about TCGA samples from GDC data portal
5.9 years ago by svlachavas ▴ 790
5
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0
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7.0k
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Answer: A: Subsetting a RangedSummarizedExperiment in R
5.9 years ago by svlachavas ▴ 790
0
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0
replies
4.5k
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Comment: C: dbSNP annotation database and appropriate filtering in somatic variant calling p
5.9 years ago by svlachavas ▴ 790
2
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1
reply
4.2k
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Comment: A: TCGAbiolinks TCGA-BRCA RNA-seq clinical data
5.9 years ago by svlachavas ▴ 790
0
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1
reply
4.0k
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Comment: C: Differences between RTCGA and TCGAbiolinks data
5.9 years ago by svlachavas ▴ 790
0
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1
reply
4.5k
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Comment: C: dbSNP annotation database and appropriate filtering in somatic variant calling p
5.9 years ago by svlachavas ▴ 790
0
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1
reply
4.5k
views
Comment: C: dbSNP annotation database and appropriate filtering in somatic variant calling p
5.9 years ago by svlachavas ▴ 790
0
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1
reply
4.5k
views
Comment: C: dbSNP annotation database and appropriate filtering in somatic variant calling p
5.9 years ago by svlachavas ▴ 790
8
votes
8
replies
4.5k
views
dbSNP annotation database and appropriate filtering in somatic variant calling pipelines
dbSNP variant filtering somatic variant calling
updated 5.9 years ago by 87k • written 5.9 years ago by ▴ 790
1
vote
1
reply
4.0k
views
Comment: C: Differences between RTCGA and TCGAbiolinks data
5.9 years ago by svlachavas ▴ 790
3
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1
reply
4.0k
views
Answer: A: Differences between RTCGA and TCGAbiolinks data
5.9 years ago by svlachavas ▴ 790
0
votes
1
reply
14k
views
Comment: C: Implement p-values and significance levels in boxplots for more of two groups wi
6.0 years ago by svlachavas ▴ 790
0
votes
1
reply
14k
views
Comment: C: Implement p-values and significance levels in boxplots for more of two groups wi
6.0 years ago by svlachavas ▴ 790
0
votes
1
reply
1.4k
views
Comment: C: Appropriate methodologies of comparing whole exome sequencing data between circu
6.0 years ago by svlachavas ▴ 790
1
vote
3
replies
1.4k
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Appropriate methodologies of comparing whole exome sequencing data between circulating tumor cells and biopsies from the same set of patients
exome sequencing variant annotation mutations
6.0 years ago by svlachavas ▴ 790
1
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1
reply
2.8k
views
Comment: C: extract TCGA data
updated 6.0 years ago by 43k • written 6.0 years ago by ▴ 790
1
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0
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2.8k
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Answer: A: extract TCGA data
6.0 years ago by svlachavas ▴ 790
0
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0
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835
views
Answer: A: Data set to perform DGE
6.1 years ago by svlachavas ▴ 790
2
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2
replies
7.9k
views
Comment: C: Samples with same TCGA barcode in TCGA data
6.1 years ago by svlachavas ▴ 790
0
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1
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7.9k
views
Comment: C: Samples with same TCGA barcode in TCGA data
6.1 years ago by svlachavas ▴ 790
3
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1
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7.9k
views
Answer: A: Samples with same TCGA barcode in TCGA data
6.1 years ago by svlachavas ▴ 790
0
votes
1
reply
14k
views
Comment: C: Implement p-values and significance levels in boxplots for more of two groups wi
6.1 years ago by svlachavas ▴ 790
0
votes
0
replies
14k
views
Comment: C: Implement p-values and significance levels in boxplots for more of two groups wi
6.1 years ago by svlachavas ▴ 790
9
votes
11
replies
14k
views
Implement p-values and significance levels in boxplots for more of two groups with ggplot2 in R concerning RNA-Seq gene expression data
boxplot R RNA-Seq ggplot2
updated 2.8 years ago by 87k • written 6.1 years ago by ▴ 790
0
votes
0
replies
3.0k
views
Comment: C: Dissimilarity measure for computing similarity between categorical variables in
6.1 years ago by svlachavas ▴ 790
0
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0
replies
3.0k
views
Comment: C: Dissimilarity measure for computing similarity between categorical variables in
6.1 years ago by svlachavas ▴ 790
0
votes
2
replies
3.0k
views
Comment: C: Dissimilarity measure for computing similarity between categorical variables in
6.1 years ago by svlachavas ▴ 790
5
votes
6
replies
3.0k
views
Dissimilarity measure for computing similarity between categorical variables in R
R clustering similarity categorical features
6.1 years ago by svlachavas ▴ 790
1
vote
1
reply
3.7k
views
Answer: A: conversion of data.frame object to SummarizedExperiment object
6.1 years ago by svlachavas ▴ 790
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