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824
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Comment: Comment: Sorting the Input Bam file by Read Id.
updated 19 months ago by 13k • written 19 months ago by ▴ 30
0
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2
replies
824
views
Sorting the Input Bam file by Read Id.
Samblaster read InputBAM id
updated 19 months ago by 13k • written 19 months ago by ▴ 30
0
votes
1
reply
766
views
Detecting NUMTS (nuclear mitochondrial sequences) in the whole genome sequenced data
genome-mining mitochondrial-genome pseudogenes NuMTs
updated 22 months ago by 44k • written 3.3 years ago by ▴ 30
0
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1
reply
5.7k
views
Answer: A: Best Way To Assemble A Plasmid
updated 5.0 years ago by 44k • written 9.1 years ago by ▴ 30
0
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1
reply
9.9k
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Comment: A: De Novo Assembly Of A Bacterial Plasmid
updated 5.0 years ago by 44k • written 9.1 years ago by ▴ 30
0
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1
reply
5.3k
views
Comment: C: Finding True SNPs after hard filtering on GATK
updated 5.1 years ago by 44k • written 9.2 years ago by ▴ 30
0
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1
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5.3k
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Comment: C: Finding True SNPs after hard filtering on GATK
updated 5.1 years ago by 44k • written 9.2 years ago by ▴ 30
0
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1
reply
5.3k
views
Comment: C: Finding True SNPs after hard filtering on GATK
updated 5.1 years ago by 44k • written 9.2 years ago by ▴ 30
0
votes
1
reply
5.3k
views
Comment: C: Finding True SNPs after hard filtering on GATK
updated 5.1 years ago by 44k • written 9.2 years ago by ▴ 30
0
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0
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6.4k
views
Comment: A: How to include unpaired reads in assembly?
updated 5.1 years ago by 44k • written 8.7 years ago by ▴ 30
3
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6
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5.1k
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System Error in SPADES during fungal denovo-genome assembly?
Assembly software error
updated 7.0 years ago by ▴ 10 • written 8.7 years ago by ▴ 30
0
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0
replies
1.7k
views
Linkage disequlibrium decay for a haploid fungi
SNP haploid LD
8.1 years ago by jigarnt ▴ 30
0
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1
reply
3.7k
views
Comment: C: Error in running a Samtools mpileup script for getting base frequency informatio
8.3 years ago by jigarnt ▴ 30
0
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1
reply
3.7k
views
Comment: C: Error in running a Samtools mpileup script for getting base frequency informatio
8.3 years ago by jigarnt ▴ 30
0
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1
reply
3.7k
views
Comment: C: Error in running a Samtools mpileup script for getting base frequency informatio
8.3 years ago by jigarnt ▴ 30
3
votes
7
replies
3.7k
views
Error in running a Samtools mpileup script for getting base frequency information
genome mpileup
updated 8.3 years ago by 104k • written 8.3 years ago by ▴ 30
0
votes
1
reply
2.0k
views
How to use "Mpileup" for getting information of the reads of the SNP from the BAM files?
SNP genome BAM Mpileup
updated 8.3 years ago by ▴ 870 • written 8.3 years ago by ▴ 30
0
votes
5
replies
2.8k
views
Error in a custom Perl script for detecting recombination
perl recombination syntax error
updated 8.5 years ago by 44k • written 8.5 years ago by ▴ 30
0
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1
reply
2.8k
views
Comment: C: Error in a custom Perl script for detecting recombination
8.5 years ago by jigarnt ▴ 30
0
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0
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29k
views
Comment: C: Tajima's D value interpretation
8.6 years ago by jigarnt ▴ 30
0
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0
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1.9k
views
Comment: C: Can a dsRNA get sequenced on illumina with the 125bp pair end library meant for
8.7 years ago by jigarnt ▴ 30
2
votes
4
replies
1.9k
views
Can a dsRNA get sequenced on illumina with the 125bp pair end library meant for DNA sequencing?
genome
updated 8.7 years ago by ★ 1.8k • written 8.7 years ago by ▴ 30
0
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0
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2.9k
views
Comment: C: What should be an ideal coverage of an assembled putative eukaryotic Plasmid?
8.7 years ago by jigarnt ▴ 30
0
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1
reply
5.1k
views
Comment: C: System Error in SPADES during fungal denovo-genome assembly?
8.7 years ago by jigarnt ▴ 30
0
votes
0
replies
2.9k
views
Comment: C: What should be an ideal coverage of an assembled putative eukaryotic Plasmid?
8.7 years ago by jigarnt ▴ 30
0
votes
1
reply
2.9k
views
Comment: C: What should be an ideal coverage of an assembled putative eukaryotic Plasmid?
8.7 years ago by jigarnt ▴ 30
0
votes
1
reply
2.9k
views
Comment: C: What should be an ideal coverage of an assembled putative eukaryotic Plasmid?
8.7 years ago by jigarnt ▴ 30
0
votes
1
reply
2.9k
views
Comment: C: What should be an ideal coverage of an assembled putative eukaryotic Plasmid?
8.7 years ago by jigarnt ▴ 30
0
votes
1
reply
2.9k
views
Comment: C: What should be an ideal coverage of an assembled putative eukaryotic Plasmid?
8.7 years ago by jigarnt ▴ 30
0
votes
1
reply
2.9k
views
Comment: C: What should be an ideal coverage of an assembled putative eukaryotic Plasmid?
8.7 years ago by jigarnt ▴ 30
4
votes
14
replies
2.9k
views
What should be an ideal coverage of an assembled putative eukaryotic Plasmid?
Assembly sequence plasmid spades
updated 8.7 years ago by ★ 2.2k • written 8.7 years ago by ▴ 30
0
votes
1
reply
2.2k
views
Comment: C: Denovo assembly of Putative Plasmid
8.7 years ago by jigarnt ▴ 30
1
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0
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4.2k
views
Answer: A: Detecting Polymorphic sites from VCF file
8.7 years ago by jigarnt ▴ 30
0
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0
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2.2k
views
Comment: C: Denovo assembly of Putative Plasmid
8.7 years ago by jigarnt ▴ 30
2
votes
5
replies
2.2k
views
Denovo assembly of Putative Plasmid
SNP next-gen software error
8.7 years ago by jigarnt ▴ 30
0
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0
replies
1.9k
views
Answer: A: the output of denovo assembly metagenomics
8.7 years ago by jigarnt ▴ 30
0
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0
replies
8.9k
views
Answer: A: Assembly Illumina Paired End Reads
8.7 years ago by jigarnt ▴ 30
0
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1
reply
9.9k
views
Comment: A: De Novo Assembly Of A Bacterial Plasmid
8.7 years ago by jigarnt ▴ 30
0
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0
replies
5.3k
views
Comment: C: Finding True SNPs after hard filtering on GATK
9.2 years ago by jigarnt ▴ 30
0
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0
replies
171k
views
Comment: C: What Is The Sequencing 'Depth' ?
9.2 years ago by jigarnt ▴ 30
0
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1
reply
5.3k
views
Comment: Comment: Finding True SNPs after hard filtering on GATK
updated 2.2 years ago by 44k • written 9.2 years ago by ▴ 30
0
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1
reply
5.3k
views
Comment: C: Finding True SNPs after hard filtering on GATK
9.2 years ago by jigarnt ▴ 30
0
votes
1
reply
5.3k
views
Comment: C: Finding True SNPs after hard filtering on GATK
9.2 years ago by jigarnt ▴ 30
0
votes
1
reply
5.3k
views
Comment: C: Finding True SNPs after hard filtering on GATK
9.2 years ago by jigarnt ▴ 30
0
votes
17
replies
5.3k
views
Finding True SNPs after hard filtering on GATK
SNP
updated 2.2 years ago by 44k • written 9.2 years ago by ▴ 30
0
votes
0
replies
5.3k
views
Comment: Comment: Finding True SNPs after hard filtering on GATK
updated 2.2 years ago by 44k • written 9.2 years ago by ▴ 30
0
votes
0
replies
5.1k
views
Comment: C: How To Select A Private Snp With Gatk From A Multisample Vcf File
9.2 years ago by jigarnt ▴ 30
0
votes
1
reply
5.1k
views
Answer: A: How To Select A Private Snp With Gatk From A Multisample Vcf File
9.2 years ago by jigarnt ▴ 30
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